Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6o07
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   0.92 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.9  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.6  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.6  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 408 VFSCWVQVYYI 376
           V SCW+ VYYI
Sbjct: 68  VMSCWMNVYYI 78


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +3

Query: 135 RTRLEVQNSKKIKRR*ENRQLCKDNLFVLTKNINRVNNSCFRSKQKNN 278
           RT  E     KI     N+ +  +N +    N N  NN+ + +   NN
Sbjct: 303 RTERERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNN 350


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +3

Query: 285 RSVNSGTSRKWKVNILLYNSETCNGLQTHCRCSKLG 392
           + V++GT   + ++  +Y ++ C    +  R SK+G
Sbjct: 623 KRVSAGTPAAFNISTTIYENQNCLDASSSRRGSKIG 658


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 408 VFSCWVQVYYI 376
           V SCW  +YYI
Sbjct: 106 VLSCWTNIYYI 116


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 408 VFSCWVQVYYI 376
           V SCW  +YYI
Sbjct: 159 VLSCWTNIYYI 169


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 282 LRSVNSGTSRKWKVNILLYNS 344
           +R +     R WK ++L+YNS
Sbjct: 95  VRDLRIPPHRLWKPDVLMYNS 115


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 306 SRKWKVNILLYNS 344
           ++ WK +IL+YNS
Sbjct: 66  NKLWKPDILMYNS 78


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 306 SRKWKVNILLYNS 344
           ++ WK +IL+YNS
Sbjct: 66  NKLWKPDILMYNS 78


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 306 SRKWKVNILLYNS 344
           ++ WK +IL+YNS
Sbjct: 66  NKLWKPDILMYNS 78


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 306 SRKWKVNILLYNS 344
           ++ WK +IL+YNS
Sbjct: 66  NKLWKPDILMYNS 78


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 306 SRKWKVNILLYNS 344
           ++ WK +IL+YNS
Sbjct: 66  NKLWKPDILMYNS 78


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 306 SRKWKVNILLYNS 344
           ++ WK +IL+YNS
Sbjct: 66  NKLWKPDILMYNS 78


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 306 SRKWKVNILLYNS 344
           ++ WK +IL+YNS
Sbjct: 134 NKLWKPDILMYNS 146


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 306 SRKWKVNILLYNS 344
           ++ WK +IL+YNS
Sbjct: 134 NKLWKPDILMYNS 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,630
Number of Sequences: 438
Number of extensions: 4020
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)