Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6o02
         (514 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1ZBT5 Cluster: Mediator of RNA polymerase II transcrip...   105   4e-22
UniRef50_A7T1N3 Cluster: Predicted protein; n=2; Nematostella ve...    60   4e-08
UniRef50_Q96G25 Cluster: Mediator of RNA polymerase II transcrip...    50   2e-05
UniRef50_Q4SRU6 Cluster: Chromosome undetermined SCAF14488, whol...    41   0.014
UniRef50_A3DI66 Cluster: Transketolase-like protein; n=1; Clostr...    34   2.2  

>UniRef50_A1ZBT5 Cluster: Mediator of RNA polymerase II
           transcription subunit 8; n=8; Endopterygota|Rep:
           Mediator of RNA polymerase II transcription subunit 8 -
           Drosophila melanogaster (Fruit fly)
          Length = 252

 Score =  105 bits (253), Expect = 4e-22
 Identities = 56/124 (45%), Positives = 73/124 (58%), Gaps = 5/124 (4%)
 Frame = +1

Query: 121 AIITSSLSHKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVG 300
           A +T+  + K + Q+ KVVSHV +++SK RE+WE ES   TG+Q T ++ADT  LV AVG
Sbjct: 129 ANLTNDAAMKQVTQYNKVVSHVLDMVSKAREEWEIESSSRTGIQQTSSMADTQLLVAAVG 188

Query: 301 TGKGLR-----PGMANMVGQXXXXXXXXXXXXXQLGPAPSTLPKAPSAIKTNIKAANQIH 465
            GKGL+     PG   MV                 G     L KAPSA+KTNIK+ANQ+H
Sbjct: 189 MGKGLKLTNYGPGPGMMVPPSIRAPSPMGGPAMSPGNVQQQLGKAPSAVKTNIKSANQVH 248

Query: 466 PYQR 477
           P+ R
Sbjct: 249 PFSR 252


>UniRef50_A7T1N3 Cluster: Predicted protein; n=2; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 264

 Score = 59.7 bits (138), Expect = 4e-08
 Identities = 37/117 (31%), Positives = 52/117 (44%)
 Frame = +1

Query: 121 AIITSSLSHKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVG 300
           A IT   + K I    ++++ + +II+  +EDWEGE   S     +    D  ALV AV 
Sbjct: 141 ASITQENAQKQINHLNELLTTLTDIITSAKEDWEGE-QNSASRSTSSTNPDIGALVAAVT 199

Query: 301 TGKGLRPGMANMVGQXXXXXXXXXXXXXQLGPAPSTLPKAPSAIKTNIKAANQIHPY 471
            GKGL+P       +              +        K PS+IKT +KAA   HPY
Sbjct: 200 FGKGLKPNKTTNSSKTRTSTSSEQGSAQWMNNKADQPGKHPSSIKTELKAAASPHPY 256


>UniRef50_Q96G25 Cluster: Mediator of RNA polymerase II
           transcription subunit 8; n=45; Euteleostomi|Rep:
           Mediator of RNA polymerase II transcription subunit 8 -
           Homo sapiens (Human)
          Length = 268

 Score = 50.4 bits (115), Expect = 2e-05
 Identities = 48/143 (33%), Positives = 61/143 (42%), Gaps = 24/143 (16%)
 Frame = +1

Query: 121 AIITSSLSHKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVG 300
           A I +  + K I    K+ S++ E ISK   + E   +R    + T N  DT+ALV AV 
Sbjct: 129 ARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPN--KQTFNPTDTNALVAAVA 186

Query: 301 TGKGLR---------PGMANMVGQXXXXXXXXXXXXXQLGPAPSTLP------------- 414
            GKGL          PG A   G              Q+  APS                
Sbjct: 187 FGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQ 246

Query: 415 --KAPSAIKTNIKAANQIHPYQR 477
             K PS IKTNIK+A+ +HPYQR
Sbjct: 247 PGKMPSGIKTNIKSAS-MHPYQR 268


>UniRef50_Q4SRU6 Cluster: Chromosome undetermined SCAF14488, whole
           genome shotgun sequence; n=2; Tetraodontidae|Rep:
           Chromosome undetermined SCAF14488, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 324

 Score = 41.1 bits (92), Expect = 0.014
 Identities = 41/130 (31%), Positives = 57/130 (43%), Gaps = 20/130 (15%)
 Frame = +1

Query: 148 KHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVGTGKGL---- 315
           K I    KV S + E ++  RE+ + ES+     +   N ADT+ LV AV  G+GL    
Sbjct: 196 KQIQALNKVCSGLLEKLNNPREERDAESISLRQNKQYFNPADTNTLVGAVAFGRGLSKCR 255

Query: 316 --------RPGMANMVGQXXXXXXXXXXXXXQLGPAPSTLP-------KAPSAIKTNIK- 447
                    PG   M+G               +  A S +P       K  S+IKTNIK 
Sbjct: 256 PAGPVAPGHPGPGTMMG-GGTALQQAAIGGGAVQQAGSVVPQQQGQQGKMASSIKTNIKS 314

Query: 448 AANQIHPYQR 477
           A++ +HPY R
Sbjct: 315 ASSSMHPYNR 324


>UniRef50_A3DI66 Cluster: Transketolase-like protein; n=1;
           Clostridium thermocellum ATCC 27405|Rep:
           Transketolase-like protein - Clostridium thermocellum
           (strain ATCC 27405 / DSM 1237)
          Length = 278

 Score = 33.9 bits (74), Expect = 2.2
 Identities = 22/64 (34%), Positives = 27/64 (42%)
 Frame = +1

Query: 139 LSHKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVGTGKGLR 318
           LS  H A+   V+ H +  I K   D  G      G  PT  I    A   ++G G GL 
Sbjct: 68  LSKGHAAEAYYVLLHEYGYIDKSDLDAFGSFQAKLGGHPTKKIKGVEANTGSLGHGLGLA 127

Query: 319 PGMA 330
            GMA
Sbjct: 128 TGMA 131


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 428,870,545
Number of Sequences: 1657284
Number of extensions: 7481608
Number of successful extensions: 18364
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18359
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31364627325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)