Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6o01
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0599 - 23550663-23550849,23553236-23553417                       32   0.40 
05_06_0195 + 26291126-26291316,26292432-26292618                       31   1.2  
02_02_0529 - 11208973-11211143,11211703-11211772,11211993-112120...    29   3.7  
03_02_0628 + 9957385-9957888,9957985-9958111,9958541-9958608,995...    28   6.5  
02_02_0535 - 11292509-11294679,11294971-11295040,11295268-112953...    28   6.5  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     28   6.5  
07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358     28   8.6  

>01_05_0599 - 23550663-23550849,23553236-23553417
          Length = 122

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 449 KHLTVKQAWLLFLISTEIGLWFFLGETIGK-FHIVGYQV 562
           K L V+   ++ L   E+  WF +GE +G+ F I GY+V
Sbjct: 84  KELKVEDLGIVTLFGVELYAWFCVGEIVGRGFTITGYKV 122


>05_06_0195 + 26291126-26291316,26292432-26292618
          Length = 125

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 449 KHLTVKQAWLLFLISTEIGLWFFLGETIGK-FHIVGYQV 562
           K L V+ A +  L   E+  WF +GE +G+ F   GY V
Sbjct: 87  KDLNVEHAGVAALFGIELYAWFCVGEIVGRGFTFTGYHV 125


>02_02_0529 -
           11208973-11211143,11211703-11211772,11211993-11212049,
           11212769-11212819,11213112-11213264,11216095-11216255,
           11216609-11216642
          Length = 898

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +3

Query: 534 GNFTSLAIKFETISIVQVCTDHNAASVYYI---LLTEKKTEVAFGVLVKFCIYYFDFLLI 704
           G+  S  IK    +  ++ TD + AS Y +    L +   +  FG+L ++C+  FD ++ 
Sbjct: 767 GDGASFIIKSVLDTATELLTDQHVASTYSMQNRALWQASFDAFFGLLTEYCMSKFDSVIH 826

Query: 705 KLR 713
            L+
Sbjct: 827 ALQ 829


>03_02_0628 +
           9957385-9957888,9957985-9958111,9958541-9958608,
           9958695-9958772,9958885-9958949,9959130-9959196,
           9959344-9959526,9959690-9959746,9959857-9959952,
           9960061-9960219
          Length = 467

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 383 EEMAKLKEDLKLFQEFMKSGC 445
           E+M KL +DLK   EFMKS C
Sbjct: 382 EKMVKLIKDLKKDNEFMKSKC 402


>02_02_0535 -
           11292509-11294679,11294971-11295040,11295268-11295324,
           11298629-11298789,11299123-11299156
          Length = 830

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +3

Query: 534 GNFTSLAIKFETISIVQVCTDHNAASVYYI---LLTEKKTEVAFGVLVKFCIYYFDFLLI 704
           G+  S  IK       ++ TD + AS Y +    L +   +  FG+L ++C+  FD ++ 
Sbjct: 699 GDGASFIIKSVLDRATELLTDQHVASTYSMQNRALWQASFDAFFGLLTEYCMSKFDSVIH 758

Query: 705 KLR 713
            L+
Sbjct: 759 ALQ 761


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 218  LFQQWTEVNMPLKSKEKIKDLLQEQIENAKRSKLAEK 328
            + ++++     LK  EK+ D+ +EQ EN K S L E+
Sbjct: 2275 MLEKYSVSEKDLKRSEKLNDVEEEQEENDKTSTLKEE 2311


>07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358
          Length = 717

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/81 (23%), Positives = 39/81 (48%)
 Frame = +2

Query: 233 TEVNMPLKSKEKIKDLLQEQIENAKRSKLAEKMKTAKGFYTLEMAPPSSSEEMAKLKEDL 412
           TEV   L+++EK+KD++Q    ++K   L  + +  +  Y  +      S+   + K   
Sbjct: 100 TEVYEALQNREKMKDMVQSDASSSKGEALQVRGRFEQKTYN-DSNDRDKSQSRGRSKSRG 158

Query: 413 KLFQEFMKSGCYKHLTVKQAW 475
           K F ++ K    K+  +++ W
Sbjct: 159 KKFCKYCKK---KNHFIEECW 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,959,486
Number of Sequences: 37544
Number of extensions: 358343
Number of successful extensions: 846
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)