Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6o01
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42830-1|AAC48276.1|  131|Caenorhabditis elegans Atp synthase g ...    56   3e-08
Z81098-3|CAB03179.1|  131|Caenorhabditis elegans Hypothetical pr...    54   1e-07
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    34   0.089
AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine r...    30   1.4  
Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain, ...    29   3.3  
AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain, ...    29   3.3  
Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal t...    29   4.4  
AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal t...    29   4.4  
AF490977-1|AAQ06435.1|  801|Caenorhabditis elegans ABC6 protein ...    29   4.4  
Z46242-3|CAA86338.2|  680|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z46242-2|CAA86335.2|  683|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   5.8  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   5.8  
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei...    28   5.8  
AF016424-7|AAB65329.3|  520|Caenorhabditis elegans Hypothetical ...    28   5.8  
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ...    28   7.7  

>U42830-1|AAC48276.1|  131|Caenorhabditis elegans Atp synthase g
           homolog protein 2 protein.
          Length = 131

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 25/68 (36%), Positives = 44/68 (64%)
 Frame = +2

Query: 359 EMAPPSSSEEMAKLKEDLKLFQEFMKSGCYKHLTVKQAWLLFLISTEIGLWFFLGETIGK 538
           E+APP  ++  A +K D    Q F+++G YK+L++++  +   ++ E+  WFF+GE IG+
Sbjct: 41  ELAPPRQADWPA-IKADWAKVQSFIQTGGYKNLSIREGLVYTAVTLEVVFWFFVGEMIGR 99

Query: 539 FHIVGYQV 562
            +I GY V
Sbjct: 100 RYIFGYLV 107


>Z81098-3|CAB03179.1|  131|Caenorhabditis elegans Hypothetical
           protein K07A12.3 protein.
          Length = 131

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 25/68 (36%), Positives = 45/68 (66%)
 Frame = +2

Query: 359 EMAPPSSSEEMAKLKEDLKLFQEFMKSGCYKHLTVKQAWLLFLISTEIGLWFFLGETIGK 538
           E+APP S++  A +K D    Q+F+++  Y +L++K++ +   ++ E+  WFF+GE IG+
Sbjct: 41  ELAPPRSADIPA-IKADWAKLQKFIETKQYVNLSIKESLVYSAVALEVVFWFFVGEMIGR 99

Query: 539 FHIVGYQV 562
            +I GY V
Sbjct: 100 RYIFGYIV 107


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 19/43 (44%), Positives = 28/43 (65%)
 Frame = +2

Query: 260  KEKIKDLLQEQIENAKRSKLAEKMKTAKGFYTLEMAPPSSSEE 388
            K+KIK ++QE+I+  K  K AEKMK  K   + ++  PS SE+
Sbjct: 1006 KDKIKQIIQEKIDEEKALKKAEKMK-QKTQTSDDLEEPSISEQ 1047


>AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine
           receptor, class z protein5 protein.
          Length = 351

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
 Frame = +1

Query: 493 YGNRPMVLLGRNDWEIS-HRWLSSLKLFQSYKFV-QIIMLHRYIIYYLLRKKQKWLLVCL 666
           YG + M +L  + +++  H +  S  +F  +  +  ++ + R+ IYY  R  +KW+L   
Sbjct: 83  YGFKIMNMLELDLFDVLYHYYFISCVIFPVFNILLTLLAVQRFFIYYSDRFGKKWIL-NQ 141

Query: 667 LNFAYIILIFY 699
            N+++II++ Y
Sbjct: 142 KNWSWIIILLY 152


>Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical
           protein C33A12.11 protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +3

Query: 648 VAFGVLVKFCIYYFDFLLIKL 710
           ++   L+ FC+++FDFL+++L
Sbjct: 73  ISLSQLICFCLFFFDFLMVRL 93


>AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 8, isoform a protein.
          Length = 1219

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/52 (21%), Positives = 26/52 (50%)
 Frame = +2

Query: 143  RNLIDMAAGVNVVKLAGNLFRSKISLFQQWTEVNMPLKSKEKIKDLLQEQIE 298
            R+ I+ +  +N++K     FR ++ ++ +W   N P++ +   +  L    E
Sbjct: 1066 RDTINTSMDINLLKACEEEFRRRLRIYNEWKSRNAPVQDRPPARAALSTVCE 1117


>AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 8, isoform b protein.
          Length = 1144

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/52 (21%), Positives = 26/52 (50%)
 Frame = +2

Query: 143  RNLIDMAAGVNVVKLAGNLFRSKISLFQQWTEVNMPLKSKEKIKDLLQEQIE 298
            R+ I+ +  +N++K     FR ++ ++ +W   N P++ +   +  L    E
Sbjct: 991  RDTINTSMDINLLKACEEEFRRRLRIYNEWKSRNAPVQDRPPARAALSTVCE 1042


>Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical
           protein W09D6.6 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 325 LSKF*SFC-VFDLLLQQILYFFFAFEWHIY 239
           +SK  S C +F ++ Q I YF F F +H Y
Sbjct: 70  ISKILSICTIFAVICQSIFYFCFTFYFHPY 99


>AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 325 LSKF*SFC-VFDLLLQQILYFFFAFEWHIY 239
           +SK  S C +F ++ Q I YF F F +H Y
Sbjct: 70  ISKILSICTIFAVICQSIFYFCFTFYFHPY 99


>AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 325 LSKF*SFC-VFDLLLQQILYFFFAFEWHIY 239
           +SK  S C +F ++ Q I YF F F +H Y
Sbjct: 70  ISKILSICTIFAVICQSIFYFCFTFYFHPY 99


>AF490977-1|AAQ06435.1|  801|Caenorhabditis elegans ABC6 protein
           protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 325 LSKF*SFC-VFDLLLQQILYFFFAFEWHIY 239
           +SK  S C +F ++ Q I YF F F +H Y
Sbjct: 70  ISKILSICTIFAVICQSIFYFCFTFYFHPY 99


>Z46242-3|CAA86338.2|  680|Caenorhabditis elegans Hypothetical
           protein F35G12.4b protein.
          Length = 680

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +1

Query: 328 NEDRERFLHPGNGTTIKLRGNGQT*RRFEIISRIHEIWLLQTPDSQTSVAS 480
           N+D  R L  G+  TI+L   GQ       I+    +W LQ   S T+V S
Sbjct: 229 NDDGTRALSAGSDATIRLWDIGQQRCIATCIAHEEGVWTLQVDSSFTTVYS 279


>Z46242-2|CAA86335.2|  683|Caenorhabditis elegans Hypothetical
           protein F35G12.4a protein.
          Length = 683

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +1

Query: 328 NEDRERFLHPGNGTTIKLRGNGQT*RRFEIISRIHEIWLLQTPDSQTSVAS 480
           N+D  R L  G+  TI+L   GQ       I+    +W LQ   S T+V S
Sbjct: 229 NDDGTRALSAGSDATIRLWDIGQQRCIATCIAHEEGVWTLQVDSSFTTVYS 279


>U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical
           protein T04G9.1 protein.
          Length = 1610

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 338 AKGFYTLEMAPPSSSEEMAKLKEDLKLFQEFMKSGCYKHLTVKQAWLLFLISTEIG 505
           A+G       P +SS E +KL +D+K  Q  +     +H   +Q+   FL+  ++G
Sbjct: 316 ARGAQVSNALPSTSSSESSKLTDDIKQEQAMISKSSLEH-PRQQSTREFLMQNQMG 370


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +2

Query: 224   QQWTEVNMPLKSKEKIKDLLQEQIENAKRSKLAEKMKTAKGFYTLEMAPPSSSEEMAKLK 403
             Q+  EVN   K KE + D L+ + E A +    EK+K        + A   ++++  +  
Sbjct: 12977 QKIAEVNKAKKQKE-VDDNLKREAEVAAKKIADEKLKIEAEANIKKTAEVEAAKKQKEKD 13035

Query: 404   EDLKLFQEFM--KSGCYKHLTVKQA 472
             E LKL  E +  KS   K    KQA
Sbjct: 13036 EQLKLETEVVSKKSAAEKLELEKQA 13060


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +2

Query: 224   QQWTEVNMPLKSKEKIKDLLQEQIENAKRSKLAEKMKTAKGFYTLEMAPPSSSEEMAKLK 403
             Q+  EVN   K KE + D L+ + E A +    EK+K        + A   ++++  +  
Sbjct: 12977 QKIAEVNKAKKQKE-VDDNLKREAEVAAKKIADEKLKIEAEANIKKTAEVEAAKKQKEKD 13035

Query: 404   EDLKLFQEFM--KSGCYKHLTVKQA 472
             E LKL  E +  KS   K    KQA
Sbjct: 13036 EQLKLETEVVSKKSAAEKLELEKQA 13060


>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
           protein.
          Length = 1198

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +2

Query: 257 SKEKIKDLLQEQIENAKRSKLAEKMKTAKGFYTLEMAPPSSSEEMAKLK 403
           S +K+K+LL +   + +++   E     KG++T    P  +S+E+AK+K
Sbjct: 186 SSDKVKELLSKLPADQQKTLYEEFKGKCKGYFT----PLMTSDELAKIK 230


>AF016424-7|AAB65329.3|  520|Caenorhabditis elegans Hypothetical
           protein F39G3.3 protein.
          Length = 520

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 251 LKSKEKIKDLLQEQIENAKRSKLAEKMKTAK 343
           ++ KEK KD+ + ++E  KR  L EK + A+
Sbjct: 356 MRKKEKEKDIKKREMERKKRHALQEKKEEAE 386


>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 7 protein.
          Length = 1887

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 260 KEKIKDLLQEQIENAKRSKLAEKMKTAKG 346
           +EK KDL+++ + NA +S  +  MKT  G
Sbjct: 680 REKNKDLMRQDVLNALKSSTSSVMKTLLG 708


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,430,772
Number of Sequences: 27780
Number of extensions: 349990
Number of successful extensions: 1050
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)