Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6n23
(603 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42437-2|AAW88401.1| 294|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z83236-10|CAB05780.2| 236|Caenorhabditis elegans Hypothetical p... 27 7.8
Z78545-2|CAB01766.1| 596|Caenorhabditis elegans Hypothetical pr... 27 7.8
U39849-8|AAA81050.1| 479|Caenorhabditis elegans Hypothetical pr... 27 7.8
U28943-17|AAK68292.2| 811|Caenorhabditis elegans Clc-type chlo... 27 7.8
U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type chlo... 27 7.8
U00036-2|AAK29859.1| 592|Caenorhabditis elegans Dumpy : shorter... 27 7.8
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo... 27 7.8
AF173172-1|AAF13165.1| 811|Caenorhabditis elegans CLC chloride ... 27 7.8
>U42437-2|AAW88401.1| 294|Caenorhabditis elegans Hypothetical
protein F30B5.8 protein.
Length = 294
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 27 SLVLTMLLFLLCISLYGASGAEFTLPGECPNMKLQENLDYTKF 155
S +L +L+F ++G F +P EC N K N Y +F
Sbjct: 129 STILCLLIFFDQYMMFGYCNNVFDVPLECDNAKCAYNQCYFEF 171
>Z83236-10|CAB05780.2| 236|Caenorhabditis elegans Hypothetical
protein K10H10.4 protein.
Length = 236
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -1
Query: 345 CFQHQTWGRL-LPGKTSGFYYPRRHSRTSPVGCSQGCLPGSPGWHNRRLAVHR 190
C Q Q + + P SG+ + SP G S GC GS G + R H+
Sbjct: 28 CNQPQLYSQCNCPSFCSGYMQQQPQYYQSPCGYSSGCSGGSGGGYYPRRRHHK 80
>Z78545-2|CAB01766.1| 596|Caenorhabditis elegans Hypothetical
protein M03B6.2 protein.
Length = 596
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 115 GHSPGSVNSAPEAPYKEIQSRNNNIVKTSDWYERCRSN 2
GH GS+ S +A KEI+ N +++ +Y +N
Sbjct: 273 GHHTGSIKSIVDAVSKEIEDLNKPLLRKDIFYSGSTTN 310
>U39849-8|AAA81050.1| 479|Caenorhabditis elegans Hypothetical
protein C06A8.5 protein.
Length = 479
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 115 GHSPGSVNSAPEAPYKEIQSRNNNIVKTSDWYER 14
GHS S+ P+ P + +R++ TS+W ER
Sbjct: 401 GHSLSSIAVTPQKPAAKFTTRSSIKDDTSEWAER 434
>U28943-17|AAK68292.2| 811|Caenorhabditis elegans Clc-type
chloride channel protein3, isoform b protein.
Length = 811
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +3
Query: 234 EDNLGYTLRETYVNVDGGNRTQKSYLARVDPTFDAGNKAQFIVSHEGGDKVLQFPFFILS 413
E+ +T++E +V+ SY + PT +A + F + H GD PF LS
Sbjct: 425 EERFSHTMKEFFVDCAWTAPPNDSYACPM-PTSNATSSDSFDIRHWKGDNYDYSPFVTLS 483
Query: 414 T 416
+
Sbjct: 484 S 484
>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type
chloride channel protein3, isoform a protein.
Length = 1001
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +3
Query: 234 EDNLGYTLRETYVNVDGGNRTQKSYLARVDPTFDAGNKAQFIVSHEGGDKVLQFPFFILS 413
E+ +T++E +V+ SY + PT +A + F + H GD PF LS
Sbjct: 354 EERFSHTMKEFFVDCAWTAPPNDSYACPM-PTSNATSSDSFDIRHWKGDNYDYSPFVTLS 412
Query: 414 T 416
+
Sbjct: 413 S 413
>U00036-2|AAK29859.1| 592|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 31, isoform a protein.
Length = 592
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -2
Query: 494 PCENIMSPGFLLQRFTRVR 438
PCEN PGF LQR VR
Sbjct: 574 PCENACCPGFTLQRGRCVR 592
>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type
chloride channel CLH-3b protein.
Length = 1001
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +3
Query: 234 EDNLGYTLRETYVNVDGGNRTQKSYLARVDPTFDAGNKAQFIVSHEGGDKVLQFPFFILS 413
E+ +T++E +V+ SY + PT +A + F + H GD PF LS
Sbjct: 354 EERFSHTMKEFFVDCAWTAPPNDSYACPM-PTSNATSSDSFDIRHWKGDNYDYSPFVTLS 412
Query: 414 T 416
+
Sbjct: 413 S 413
>AF173172-1|AAF13165.1| 811|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 811
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +3
Query: 234 EDNLGYTLRETYVNVDGGNRTQKSYLARVDPTFDAGNKAQFIVSHEGGDKVLQFPFFILS 413
E+ +T++E +V+ SY + PT +A + F + H GD PF LS
Sbjct: 425 EERFSHTMKEFFVDCAWTAPPNDSYACPM-PTSNATSSDSFDIRHWKGDNYDYSPFVTLS 483
Query: 414 T 416
+
Sbjct: 484 S 484
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,120,930
Number of Sequences: 27780
Number of extensions: 342241
Number of successful extensions: 879
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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