Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6n21
         (122 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   0.34 
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    23   7.4  
SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    22   9.7  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.1 bits (57), Expect = 0.34
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 121 FFFLLCVCLCMHVT*FYFRRSHLL 50
           FFF LCVC+ +    F F  SHLL
Sbjct: 157 FFFFLCVCVFLS---FLFSLSHLL 177


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 41  AND*KM*SAKIKLSDMH 91
           AND ++ SA + LSDMH
Sbjct: 475 ANDDEVVSAVVSLSDMH 491


>SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 80  LVLFSQITSSSHSPLFQNLTK 18
           L++F+ + SSS +P+F  LTK
Sbjct: 98  LIMFNTVCSSSPNPVF-TLTK 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 458,193
Number of Sequences: 5004
Number of extensions: 4908
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 21
effective length of database: 2,257,394
effective search space used: 42890486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)