Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6n19
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    43   4e-05
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.36 
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    27   2.5  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   5.8  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    26   5.8  
SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit L1...    25   7.7  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 18/40 (45%), Positives = 29/40 (72%)
 Frame = +2

Query: 2   HQMMRVLSPEEYILATINLYLDILNLFLYILRILNELNRN 121
           + ++   SPEE+I++++ LYLD +NLF+ IL+IL  L  N
Sbjct: 224 YNILHRYSPEEFIMSSLMLYLDFINLFIRILQILGMLQNN 263


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 4   PDDEGPVSGGIHLGNHQSVLGHSEP 78
           P+ E P S GI   +  SVLGHS+P
Sbjct: 423 PNFELPESNGIEFAHEDSVLGHSKP 447


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 89  CTGIGSECPSTD*WLPRCIPPE-TGP 15
           C  +GS C  ++ W  +CIP + TGP
Sbjct: 43  CCVVGSSCIYSNPWYSQCIPVDYTGP 68



 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 89  CTGIGSECPSTD*WLPRCIPPETGPSSS 6
           C   GSEC     +  +CIP +  PSSS
Sbjct: 86  CCEPGSECIYNGPYYSQCIPVDIDPSSS 113


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -2

Query: 149 FPKRTTKCINSCLTHSKF*VCTGIGSECPSTD*W 48
           F    T C  S     K   CTGI S+CP  + W
Sbjct: 367 FKNAGTLCRQSTNPCDKPEFCTGISSKCPVDENW 400


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +1

Query: 7   DDEGPVS--GGIHLGNHQSVLGHSEPIPVHTQNFE*VKQELMHLVVLLG 147
           +D+ P+    GI + N QS+   +E + V T++F  ++   +H+ +LLG
Sbjct: 49  NDQVPIEFLAGIDI-NEQSIERATEALQVRTEDFLQLRWRPLHIELLLG 96


>SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit
           L19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 273 FTICNPPTPQLISMFVDLE 329
           FTI  PPT  LIS  +DLE
Sbjct: 69  FTIHTPPTSWLISKTLDLE 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,707
Number of Sequences: 5004
Number of extensions: 44625
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)