Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6n19
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0254 - 19444409-19444621,19444724-19444887,19444974-194450...    40   0.001
03_06_0293 - 32889813-32890019,32890144-32890301,32891310-328914...    38   0.006
11_06_0192 + 21128298-21128829,21129341-21129407,21131169-211312...    33   0.16 
03_05_1105 + 30438140-30438350,30438448-30438926                       33   0.16 
03_06_0292 - 32886148-32886354,32886997-32887154,32887265-328873...    33   0.21 
07_01_0554 - 4121692-4121895,4121991-4122148,4123241-4123354,412...    32   0.48 
07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155           31   0.84 
04_03_0599 + 17848487-17848653,17849163-17849374,17849424-178494...    28   6.0  

>05_04_0254 -
           19444409-19444621,19444724-19444887,19444974-19445087,
           19446086-19446395
          Length = 266

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 16/28 (57%), Positives = 23/28 (82%)
 Frame = +2

Query: 29  EEYILATINLYLDILNLFLYILRILNEL 112
           ++YI A++ LYLDILNLFLYIL ++  +
Sbjct: 235 DDYIWASVELYLDILNLFLYILNMIRSM 262


>03_06_0293 -
           32889813-32890019,32890144-32890301,32891310-32891423,
           32891531-32891777
          Length = 241

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 14/25 (56%), Positives = 22/25 (88%)
 Frame = +2

Query: 29  EEYILATINLYLDILNLFLYILRIL 103
           +EY+ A ++LYLD++NLFL +LR+L
Sbjct: 212 DEYVWAAVSLYLDVINLFLALLRVL 236


>11_06_0192 +
           21128298-21128829,21129341-21129407,21131169-21131211,
           21131301-21131367,21131613-21131770,21131863-21132057
          Length = 353

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 12/28 (42%), Positives = 23/28 (82%)
 Frame = +2

Query: 2   HQMMRVLSPEEYILATINLYLDILNLFL 85
           +Q+++  +  EY++A I+LYLD++NLF+
Sbjct: 319 NQLIKRHTYNEYVIAAISLYLDVINLFM 346


>03_05_1105 + 30438140-30438350,30438448-30438926
          Length = 229

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 13/31 (41%), Positives = 23/31 (74%)
 Frame = +2

Query: 8   MMRVLSPEEYILATINLYLDILNLFLYILRI 100
           +++  S +EY+ A + LYLD++NLFL +L +
Sbjct: 193 LIKRYSYDEYVWAAVALYLDVINLFLSLLTL 223


>03_06_0292 -
           32886148-32886354,32886997-32887154,32887265-32887378,
           32887660-32887924
          Length = 247

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +2

Query: 29  EEYILATINLYLDILNLFLYILRIL 103
           +EY+ A I LYLDI+NLF+ ++  L
Sbjct: 218 DEYVAAAITLYLDIINLFMALVTAL 242


>07_01_0554 -
           4121692-4121895,4121991-4122148,4123241-4123354,
           4123824-4124082
          Length = 244

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 10/24 (41%), Positives = 20/24 (83%)
 Frame = +2

Query: 29  EEYILATINLYLDILNLFLYILRI 100
           ++Y+ A ++LYLD++NLFL ++ +
Sbjct: 216 DQYVWAAVSLYLDVINLFLSLMTL 239


>07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155
          Length = 220

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 29  EEYILATINLYLDILNLFLYILRILN 106
           +EY+ A I+LYLD +N+F+ I   L+
Sbjct: 191 DEYVTAAISLYLDTVNIFIAIFTALD 216


>04_03_0599 +
           17848487-17848653,17849163-17849374,17849424-17849498,
           17849499-17849677
          Length = 210

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -1

Query: 258 IFFWILLYTIIFMHTITLKYTVYENCLDRLCINYPPFSQKDY*MH*FLFNSFKILSMYRN 79
           +F  ++L  I+ + TI   Y  YE C+DR    Y  F+  +  M+  ++  F     +R 
Sbjct: 144 LFLCLMLTGIVAVLTIPALYQKYEECIDR----YMRFAYLNLQMYEMVYERFSAKCFHRA 199

Query: 78  R 76
           R
Sbjct: 200 R 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,471,191
Number of Sequences: 37544
Number of extensions: 238341
Number of successful extensions: 408
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)