Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6n19
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28740-4|AAA68319.2|  276|Caenorhabditis elegans Temporarily ass...    46   3e-05
Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical p...    40   0.002
Z70753-1|CAD44126.1|  296|Caenorhabditis elegans Hypothetical pr...    36   0.020
AC024777-1|AAF60563.1|  133|Caenorhabditis elegans Hypothetical ...    35   0.047
Z70753-10|CAD44125.1|  296|Caenorhabditis elegans Hypothetical p...    35   0.062
U88168-4|AAC24402.1|  342|Caenorhabditis elegans Hypothetical pr...    29   3.1  

>U28740-4|AAA68319.2|  276|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 132 protein.
          Length = 276

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 20/37 (54%), Positives = 29/37 (78%)
 Frame = +2

Query: 8   MMRVLSPEEYILATINLYLDILNLFLYILRILNELNR 118
           +M   SPE+YI A ++LY+DILNLF+ IL+I+ E N+
Sbjct: 240 IMYRFSPEDYICACVSLYMDILNLFIRILQIVAEANK 276


>Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical
           protein F40F9.2 protein.
          Length = 244

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/27 (59%), Positives = 22/27 (81%)
 Frame = +2

Query: 20  LSPEEYILATINLYLDILNLFLYILRI 100
           LSPE+YI A + ++LDILN+FL +L I
Sbjct: 213 LSPEDYIFAAMEIFLDILNIFLMLLNI 239


>Z70753-1|CAD44126.1|  296|Caenorhabditis elegans Hypothetical
           protein F40F9.1b protein.
          Length = 296

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = +2

Query: 20  LSPEEYILATINLYLDILNLFLYILRILNELN 115
           +SPEEYI A++ +++DI+ +F ++L +    N
Sbjct: 265 ISPEEYIFASVQIFIDIVQMFWFLLSLFGSRN 296


>AC024777-1|AAF60563.1|  133|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.2 protein.
          Length = 133

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 14/28 (50%), Positives = 22/28 (78%)
 Frame = +2

Query: 20  LSPEEYILATINLYLDILNLFLYILRIL 103
           +SPEEYI A  ++++DIL +FL IL ++
Sbjct: 103 ISPEEYIFAATHVFVDILGMFLNILGVV 130


>Z70753-10|CAD44125.1|  296|Caenorhabditis elegans Hypothetical
           protein F40F9.1a protein.
          Length = 296

 Score = 34.7 bits (76), Expect = 0.062
 Identities = 11/27 (40%), Positives = 22/27 (81%)
 Frame = +2

Query: 20  LSPEEYILATINLYLDILNLFLYILRI 100
           +SPEEYI A++ +++DI+ +F ++L +
Sbjct: 265 ISPEEYIFASVQIFIDIVQMFWFLLSL 291


>U88168-4|AAC24402.1|  342|Caenorhabditis elegans Hypothetical
           protein K11H12.8a protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = +2

Query: 38  ILATINLYLDILNLFLYILRILNELNRN 121
           I A +++Y+D+LN+F+ ++ I+  +N N
Sbjct: 312 INAQMSIYMDVLNIFMRLVMIMGGMNGN 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,554,020
Number of Sequences: 27780
Number of extensions: 251563
Number of successful extensions: 521
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)