Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6n18
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    27   3.5  
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual     26   4.6  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.0  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   6.0  

>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 286 ILKVLN-LKKFFQMINNNATKIDFTLLKPSQVLMKNIHVNWLRFTLGK 426
           +L  LN L+  F  + +    +DFTL   SQV      ++W    +GK
Sbjct: 475 VLTFLNKLESTFSFVESRRMNVDFTLNDTSQVEAFEKDLDWRSTPMGK 522


>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +1

Query: 412 FTLGKTQKHMPVYLNRKTFELCDKNIPF 495
           +TLG  Q  + +YL  +T+++ +++ P+
Sbjct: 114 WTLGFLQPSVKIYLTERTYKVIERSFPY 141


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 537 SQPEKCLSRRNF*ISTKHNYTPKR 608
           SQPE+  S++ + +  KHN  PK+
Sbjct: 48  SQPEEVSSKKPWYVDEKHNLFPKK 71


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 242 VFYFEQWYIPSRSHKVIILFHCSIF*YVLLTISLCNLVRTKIEV-FIF 102
           V+YF  W++    ++  ILF  S F   LL I L     +K+ V F+F
Sbjct: 303 VWYFPLWHMGISGYEACILFELSPF---LLGIPLLRKFASKVPVIFLF 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,233
Number of Sequences: 5004
Number of extensions: 61038
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)