Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6n18
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0028 - 22243272-22243577,22244564-22244713,22244919-222456...    28   8.3  

>04_04_0028 -
           22243272-22243577,22244564-22244713,22244919-22245656,
           22247233-22247331,22247541-22247933,22248806-22248961
          Length = 613

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/80 (23%), Positives = 31/80 (38%)
 Frame = +1

Query: 301 NLKKFFQMINNNATKIDFTLLKPSQVLMKNIHVNWLRFTLGKTQKHMPVYLNRKTFELCD 480
           N++K  Q       +      +   +L+ N++  W+ F +    KH+   L    F  CD
Sbjct: 276 NVEKVLQNYQGKMVEAFGIKFEFDSILVDNLN-KWVSFAVSARTKHLSFDLVPIRFARCD 334

Query: 481 KNIPFGFITIDKQSTEILTH 540
               F F  +D  S   L H
Sbjct: 335 DRFIFPFELLDSGSICRLQH 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,579,024
Number of Sequences: 37544
Number of extensions: 307888
Number of successful extensions: 570
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)