Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6n17
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    30   0.30 
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p...    29   0.68 
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    27   3.6  
SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyce...    26   4.8  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    26   6.4  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    26   6.4  

>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +1

Query: 25   LGVQIKIRDLVFVHIEKYLRQHVASSFWSKYIKTAEEVKGFQLFKSSVNDLYEAVSSFS 201
            LGV+ K  +++  H E +L +   SSF  + +K +  +    ++KS V  L + + SF+
Sbjct: 1203 LGVESKTNNILENHTEAFLIEQAVSSFLERGVKQS-SIGIISIYKSQVELLSKNLKSFT 1260


>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 359

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 454 CNCAYIVKVFHETNRKLVELQLLERLTGQVLTNFIQLRIQSHI 582
           C C +I   FHET  ++  LQ L+     +    + +R++ HI
Sbjct: 176 CVCLWIASKFHETEDRVPLLQELKLACKNIYAEDLFIRMERHI 218


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 148 QLFKSSVNDLYEAVSSFSPMLQRLTKLNSSCNDNKLIYGE-KNLVLGFKQLV 300
           ++FK+ V++     +S  P    L  +  S ND K + GE KN  L  K+ +
Sbjct: 348 EIFKAEVSETKNNGNSDKPSFDFLKYITESTNDIKAMTGEQKNYFLQIKKFL 399


>SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 214

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 340 CIINQFYKISFNVFDNEYENSDMGE 414
           C++N+  + +F V +NEY   D G+
Sbjct: 169 CVVNESVEENFRVSENEYITLDKGD 193


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +1

Query: 232 SSCNDNKLIYGEKNLVLGFKQLVRATLLSQLPIDFQCIINQFYKISFNVFDNEYENS 402
           S+C D  L +   N V GF+  ++ +  SQ   DF    ++  + + N   N Y+++
Sbjct: 589 SNCLDVVLTHSASNWVTGFETKLKKSWTSQQKRDF----SRLPRFTLNFIGNRYDHA 641


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +1

Query: 145 FQLF--KSSVNDLYEAVSSFSPMLQRLTKLNSSCNDN 249
           F LF  K S ND     S FS + QRL ++++SCN++
Sbjct: 361 FTLFVGKQSKND----DSDFSSLCQRLDEISASCNND 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,050,501
Number of Sequences: 5004
Number of extensions: 62205
Number of successful extensions: 210
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)