Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6n17
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0342 - 42860548-42862343,42863345-42863396,42863666-428638...    37   0.019
06_03_1331 - 29389159-29390300,29390415-29390822,29390930-29391413     30   2.2  
04_03_0734 + 19134129-19134464,19135864-19136789,19137148-191376...    29   2.9  
06_03_1333 - 29410014-29410052,29410071-29410322,29410601-294106...    28   6.6  
06_01_0169 - 1346281-1349188,1350069-1350184                           28   6.6  
04_03_0774 - 19457218-19457517,19457575-19457673,19457679-194577...    28   8.8  
04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,134...    28   8.8  

>01_07_0342 -
           42860548-42862343,42863345-42863396,42863666-42863848,
           42864288-42864461,42864528-42864962
          Length = 879

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 6/144 (4%)
 Frame = +1

Query: 178 YEAVSSFSPMLQRLTKLNSS-CNDNKLIYGEKNLVLGFKQLVRATL-LSQLPIDFQCIIN 351
           YE ++ F P L     L+ S C       GE++L LGFK   R T+   +  +       
Sbjct: 118 YEGLAGFIPGLSECRLLDQSDCFARLYQVGEQDLALGFKFNARGTIDCYEGELQLLPAGA 177

Query: 352 QFYKISFNVFDNEYENSDMGEDIMCSGCGNEYS-DCNCAYIVKVFHETNRKL-VELQLLE 525
           +  +I+FN+ D +++  +    +     G E S D     I+    E   KL V ++LLE
Sbjct: 178 RRREIAFNMIDGDFKVFEGNWSVQEEVDGGEISADQEFQTILSYVVELEPKLWVPVRLLE 237

Query: 526 -RLTGQVLTNFIQLRIQS-HIQKV 591
            R+  ++ TN   +R ++  IQ++
Sbjct: 238 GRICNEIKTNLFSIREEAQRIQRL 261


>06_03_1331 - 29389159-29390300,29390415-29390822,29390930-29391413
          Length = 677

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 475 SQCMHSYNRNTRFHNQNTLCPRPCRSFHI-HYRKH*KI-FCRIGL 347
           S C+H    N R  +Q   C  PC++ HI H  K  K+ F R+ L
Sbjct: 150 SSCIHKLFSNARERSQFLCCAYPCKASHIEHTMKTPKLKFDRVDL 194


>04_03_0734 +
           19134129-19134464,19135864-19136789,19137148-19137615,
           19138096-19138159,19138885-19139022
          Length = 643

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 526 FLTIVTPPTSYLFHEILSQCMHSYNRNTRFHNQNTLCPR 410
           FLT+  P  S +F  +++  ++ Y    + H+Q++L  R
Sbjct: 490 FLTVANPTGSLIFSGVIASNLYDYEAEKQAHHQSSLSGR 528


>06_03_1333 -
           29410014-29410052,29410071-29410322,29410601-29410633,
           29411035-29411045,29411420-29415325,29415437-29415920
          Length = 1574

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 475 SQCMHSYNRNTRFHNQNTLCPRPCRSFHI-HYRKH*KI-FCRIGL 347
           S C+H    N R  ++   C  PC++ HI H  K  K+ F R+ L
Sbjct: 150 SGCIHKLFSNARERSRFLCCAYPCKALHIEHTTKTPKLKFDRVDL 194


>06_01_0169 - 1346281-1349188,1350069-1350184
          Length = 1007

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 3/141 (2%)
 Frame = +1

Query: 31  VQIKIRDLVFVHIEKYLRQHVASSFWSKYIKTAEEVKGFQLFKS-SVNDLYEA--VSSFS 201
           + +KIR+L     E   R    +S   +   T +E++  +  ++ S +++ EA  V   +
Sbjct: 108 IAVKIRNLKSRLEEVSSRNTRYNSIKMEANNTFDEIESMEDVRNHSRSNIDEAKLVGFDT 167

Query: 202 PMLQRLTKLNSSCNDNKLIYGEKNLVLGFKQLVRATLLSQLPIDFQCIINQFYKISFNVF 381
           P  + L K+N   ND+   +     V+G   L + TL+ ++    + IIN F   ++ V 
Sbjct: 168 PKKELLDKINMDANDDD--HCRVLCVVGMGGLGKTTLVRKIFESKEDIINNFPHRAWIVV 225

Query: 382 DNEYENSDMGEDIMCSGCGNE 444
              +   +M +D++    G+E
Sbjct: 226 SQSFSMIEMLKDMISQLLGHE 246


>04_03_0774 -
           19457218-19457517,19457575-19457673,19457679-19457726,
           19458382-19458482,19458807-19458918,19459132-19459515,
           19459952-19460128
          Length = 406

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 160 SSVNDLYEAVSSFSPMLQRLTKLNSSCNDN 249
           SSVN++Y   S  SP L  +   NS  +DN
Sbjct: 128 SSVNNVYTPTSVLSPTLASVLGTNSDASDN 157


>04_01_0126 -
           1340540-1341376,1341437-1341900,1342105-1342156,
           1342225-1342799,1343596-1343703,1345823-1346155,
           1346783-1349306
          Length = 1630

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 130 EEVKGFQLFKSSVNDLYEAVSSFSPMLQRLTKLNSSCNDNK 252
           E +KG Q+   S N L   +      LQ L KLN S N+ K
Sbjct: 507 ENLKGLQILDLSNNQLVGGIPEGLEKLQALQKLNLSFNNLK 547


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,381,685
Number of Sequences: 37544
Number of extensions: 341508
Number of successful extensions: 757
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)