Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6n17
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82278-6|CAB05258.1|  690|Caenorhabditis elegans Hypothetical pr...    35   0.052
AL021493-6|CAA16394.2|  781|Caenorhabditis elegans Hypothetical ...    33   0.28 
AL132943-6|CAC14393.1|  511|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z93391-5|CAB07686.3|  387|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z82278-6|CAB05258.1|  690|Caenorhabditis elegans Hypothetical
           protein M162.7 protein.
          Length = 690

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = +1

Query: 148 QLFKSSVNDLYEAVSSFSPMLQRLTKLNSSCNDNKLIYGEKNLVLGFKQLVRATLLSQLP 327
           ++FK     L    SSF P+   L  LN+   +  ++ G   +  GF+QL    LLS +P
Sbjct: 308 KIFKVKRASLDNLASSFKPLPLSLEILNNFNKELTVVAGSSQIYDGFEQL--NALLSSVP 365

Query: 328 IDFQCI---INQFYK 363
           +D + +   +N+F+K
Sbjct: 366 VDIEHVTGLMNKFHK 380


>AL021493-6|CAA16394.2|  781|Caenorhabditis elegans Hypothetical
           protein Y51A2B.6 protein.
          Length = 781

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
 Frame = +1

Query: 148 QLFKSSVNDLYEAVSSFSPMLQRLTKLNSSCNDNKLIYGEKNLVLGFKQLVRATLLSQLP 327
           ++FK     L +  +SF P+   L  LN+  N+ K++ G   +  GF+QL  + LL  +P
Sbjct: 358 RMFKVRRASLDKLANSFKPLPLALEILNNFNNELKVVAGSSQMYDGFEQL--SALLLSIP 415

Query: 328 IDFQ---CIINQFYKISFNVFDNEYEN 399
              +     +N+ Y+ +  V D ++E+
Sbjct: 416 DGIEHVTAFMNKIYECNSPV-DEKFES 441


>AL132943-6|CAC14393.1|  511|Caenorhabditis elegans Hypothetical
           protein Y116F11B.11 protein.
          Length = 511

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/77 (29%), Positives = 38/77 (49%)
 Frame = +1

Query: 103 FWSKYIKTAEEVKGFQLFKSSVNDLYEAVSSFSPMLQRLTKLNSSCNDNKLIYGEKNLVL 282
           F+ K I+    +K FQ+ ++S NDL   + + S ML          N+ K   G   +  
Sbjct: 160 FYLKNIRNPWLLKIFQVKRTSFNDLPTGLETASEMLDNFN------NELKAFAGNLQMYD 213

Query: 283 GFKQLVRATLLSQLPID 333
           GF+QL +  L+  +P+D
Sbjct: 214 GFEQLQK--LVPSVPLD 228


>Z93391-5|CAB07686.3|  387|Caenorhabditis elegans Hypothetical
           protein W04G5.6 protein.
          Length = 387

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 172 DLYEAVSSFSPMLQRLTKLNSSCNDNKLIYGEKNLVLGFKQLV 300
           DL E  SS +P  Q   K+ S  N+N L    KNL +  +Q +
Sbjct: 40  DLEEPSSSLTPFDQVKAKIESLVNENHLEIDPKNLTISNEQSI 82


>Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical protein
            C27A7.4 protein.
          Length = 1403

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +1

Query: 67   IEKYLR---QHVASSFWSKYIKTAEEVKGFQLFKSSVNDLY 180
            IE+Y+R   +    S+W  Y+++  E++G   F SS  D Y
Sbjct: 888  IEQYVRRKREESLYSWWGAYLESVGELEGAISFYSSAKDYY 928


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,831,412
Number of Sequences: 27780
Number of extensions: 342736
Number of successful extensions: 975
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)