Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6n16
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    43   3e-06
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    40   2e-05
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    26   0.38 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    24   1.2  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    24   1.2  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    24   1.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.5  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 42.7 bits (96), Expect = 3e-06
 Identities = 24/69 (34%), Positives = 38/69 (55%)
 Frame = +1

Query: 469 RELEILTKIENPHIIQVHSILQRGPRVFIFMRYADNGDLLDFIKRNGVVPENQAKLWFRQ 648
           R L + TK   P ++Q+HS  Q   R++  M Y + GDL+  I++ G   E  A  +  +
Sbjct: 36  RVLALSTK--PPFLVQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQCGKFKEPVAVFYASE 93

Query: 649 MASGLQYLH 675
           +A GL +LH
Sbjct: 94  IAIGLFFLH 102


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = +1

Query: 430 EKAPRDFLEKFFPRELEILTKIENPHIIQVHSILQRGPRVFIFMRYADNGDLLDFIKRN- 606
           +KA  DFL      E  I+ + E+P++I +  ++ +   V I   + +NG L  F++ N 
Sbjct: 675 DKARNDFLT-----EASIMGQFEHPNVIFLQGVVTKSNPVMIITEFMENGSLDTFLRAND 729

Query: 607 GVVPENQAKLWFRQMASGLQYL 672
           G     Q     R +ASG+QYL
Sbjct: 730 GKFQVLQLVGMLRGIASGMQYL 751


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 78  KFVKYYDITKNLDIKN 31
           K +K Y +TKNL+IKN
Sbjct: 91  KNIKLYGLTKNLEIKN 106


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 195 DQRFRYLYCQNYYKFYF 145
           +  ++ LYC NY K Y+
Sbjct: 93  NNNYKKLYCNNYKKLYY 109


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 195 DQRFRYLYCQNYYKFYF 145
           +  ++ LYC NY K Y+
Sbjct: 93  NNNYKKLYCNNYKKLYY 109


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 195 DQRFRYLYCQNYYKFYF 145
           +  ++ LYC NY K Y+
Sbjct: 93  NNNYKKLYCNNYRKLYY 109


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 350 TPRFTWRSTAMALARNGCTSLVKYST 427
           TP+ TW     AL  NG   + +Y T
Sbjct: 450 TPQVTWALDGFALPTNGRFMIGQYVT 475


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 350 TPRFTWRSTAMALARNGCTSLVKYST 427
           TP+ TW     AL  NG   + +Y T
Sbjct: 450 TPQVTWALDGFALPTNGRFMIGQYVT 475


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 421 FDKEKAPRDFLEKFFPRELE 480
           FD E   ++FL K FP  +E
Sbjct: 643 FDLEPRQKEFLPKEFPANIE 662


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,684
Number of Sequences: 438
Number of extensions: 4672
Number of successful extensions: 28
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)