Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6n12
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    28   1.00 
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    27   2.3  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    26   3.0  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   4.0  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   5.3  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    25   7.0  
SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|...    25   7.0  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    25   7.0  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    25   7.0  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.0  
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    25   9.3  

>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 27.9 bits (59), Expect = 1.00
 Identities = 17/69 (24%), Positives = 37/69 (53%)
 Frame = +3

Query: 66  GLVDLNVLKTEIEEAKPNGALDEVFKKYCDKSAQLKGCISSVLQGVRPCVGNEYANHIND 245
           GL  +N+L + ++ +K    LD+V     D + +L  C++S+L+  +   G+E    +  
Sbjct: 85  GLKIVNILSS-LDSSKWEAYLDQVVN--ADSADELTVCLTSILKKAKIIPGSEARVFVGY 141

Query: 246 AQNSTNQLI 272
              ST++++
Sbjct: 142 DSRSTSEIL 150


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = -3

Query: 457 ISSTFAHFSTRLKLLADSTVGKLCFKFKKHVLRFSVFCWKHSGPPSAMNKAIRSP 293
           +  +   F++RL+ L D        K     +  S+  W+   PPS ++ + +SP
Sbjct: 280 VGGSILEFNSRLQKLVDDPNSLKAIKTSTQNVGRSIVYWEKEFPPSNIDSSPQSP 334


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 432 QQGSSYWRIPQWGSSVSNLKSMS*DSQSFAGSTQGRLP 319
           Q+ SS  R+  + S++S+LKS    SQ+  GST   +P
Sbjct: 376 QRLSSLNRVASFESNISSLKSALYASQNSDGSTSNPVP 413


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 219 NEYANHINDAQNSTNQLIDFVCYKDGD 299
           +EY N + D + + N++++   YKD D
Sbjct: 569 DEYRNKLKDKEETYNEVMNAFQYKDND 595


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 256 LFWASLMWFAYSLPTQGRTPCSTELIQP 173
           L WAS+  FAY LP     P +T    P
Sbjct: 128 LQWASVPLFAYDLPPDPSNPNATSSSPP 155


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 216 GNEYANHINDAQNSTNQLIDFVCYKDGDRIALFIAEG 326
           G+   NH+ D    T  +  F+ Y D   I  F  +G
Sbjct: 207 GSHLMNHLKDYVRGTTTIQHFLTYADNYAIGYFKKQG 243


>SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 106

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 279 VCYKDGDRIALFIAEGGPECFQQKTENLKTCFL-NLKQSFPTVESANN 419
           VCY+  D   + IA  GP+  + + +  KT  L  +  SF    ++NN
Sbjct: 11  VCYQPEDTTFIIIASNGPDVMRWRKD--KTVPLTEIVDSFQVFTTSNN 56


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +3

Query: 288 KDGDRIALF---IAEGGPECFQQK--TENLKTCFLNLKQSFPTVESANNLSLVEKCAKVD 452
           +D +RI  +   +AEG  +  Q+    E +KT     K   P   + N  +L  K  KVD
Sbjct: 130 EDDNRIPFYDLDVAEGAEDDLQEDFHVEGMKTKS-GRKIQRPVAYNPNATALKRKSRKVD 188

Query: 453 EMTSCIV 473
            +T C V
Sbjct: 189 MVTLCSV 195


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +3

Query: 165 QLKGCISSVLQGVRPCVG---NEYANHINDAQNSTNQLIDFVCYKD 293
           +L   I+  L  ++P +    N Y  HI  +  +  +L  F CYK+
Sbjct: 53  KLTKAITEYLSNLKPQLSKQENIYVKHIKSSNEAKTELEIFNCYKE 98


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 14/62 (22%), Positives = 28/62 (45%)
 Frame = +3

Query: 138 FKKYCDKSAQLKGCISSVLQGVRPCVGNEYANHINDAQNSTNQLIDFVCYKDGDRIALFI 317
           FK Y D +  L    +  +     C+ +EY   +  + +S++Q    + Y++  R A  +
Sbjct: 13  FKFYIDTALLLN---AEFISSFTNCINSEYNGKVKISYSSSSQQFKVIVYEEHKREAFSL 69

Query: 318 AE 323
            E
Sbjct: 70  FE 71


>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 322 SAMNKAIRSPSL*HTKSMS*LVLFWASLMWFAYS 221
           S++  AI +P +   K  +  V+ W + +W  YS
Sbjct: 257 SSIFLAIVAPKVEGAKRQTLFVIIWLAFLWIGYS 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,052,424
Number of Sequences: 5004
Number of extensions: 38840
Number of successful extensions: 112
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)