Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6n12
         (531 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610...    28   4.1  
11_05_0068 - 18782658-18782984,18784634-18784783,18784853-187857...    27   9.4  
06_03_0992 - 26680555-26680840,26680893-26681279,26681364-266824...    27   9.4  
03_02_0268 - 6994095-6994555,6996873-6996982,6997237-6998612           27   9.4  
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332...    27   9.4  

>01_05_0439 -
           22159425-22159520,22160137-22160345,22161028-22161066,
           22161196-22161356,22161447-22161518,22162002-22162183,
           22162580-22162703,22164196-22164299,22165526-22165725,
           22165838-22166069,22166156-22166239,22166329-22166386,
           22166724-22166771,22167924-22168081,22168451-22168501,
           22168585-22168658,22168760-22168835,22169685-22169729,
           22169833-22169899,22169978-22170095,22170580-22170775,
           22171551-22171640,22171985-22172039,22172755-22172975,
           22173362-22173454,22173608-22173721,22173918-22173981,
           22174081-22174181,22174306-22174447,22174528-22174729,
           22174883-22174976,22176172-22176348
          Length = 1248

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 99  IEEAKPNGALDEVF-KKYCDKSAQLKGCISSVLQGVRPCVGNEYANHINDAQNSTNQLID 275
           I+ A P+G   + F KK    + Q    +S ++Q +      +Y    N+A+ +TN L+D
Sbjct: 421 IDNASPSGFNTQAFLKKRSRATNQPVESMSMIMQFIETQGFLDYLERCNNAEENTNNLLD 480


>11_05_0068 -
           18782658-18782984,18784634-18784783,18784853-18785716,
           18785877-18786005,18786112-18786188,18786507-18786607,
           18786772-18786896
          Length = 590

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 354 ENLKTCFLNLK--QSFPTVESANNLSLVEKCAKVDEMTSCI 470
           E+LK CF+NL+   +F  + S   L L   C   +++ S +
Sbjct: 283 EHLKLCFMNLRPLPTFSGLRSLKTLDLALVCITTEDLESLL 323


>06_03_0992 -
           26680555-26680840,26680893-26681279,26681364-26682441,
           26682537-26683083
          Length = 765

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 493 EHSSRDFTIQEVISSTFAHFSTRLKLLADS 404
           EHSS  F +QE++ S +A  +T L  LA S
Sbjct: 509 EHSSFFFHVQEILYSRWAKSNTPLHCLAHS 538


>03_02_0268 - 6994095-6994555,6996873-6996982,6997237-6998612
          Length = 648

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 294 GDRIALFIAEG-GPECFQQKTENLKTCFLN 380
           G ++ L I  G GPE  QQ +E LK C +N
Sbjct: 413 GAKLLLVIQSGCGPELKQQASELLKLCTMN 442


>01_01_0447 -
           3327727-3328144,3328438-3328688,3328820-3328909,
           3329061-3329159,3329240-3329353,3329450-3329555,
           3329661-3329740,3329913-3330173,3330271-3330507,
           3330635-3330922
          Length = 647

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 237 INDAQNSTNQLIDFVCYKDGDRIALFIA 320
           I +A N ++QL+DF+   +G +I ++ A
Sbjct: 265 ICEASNKSSQLVDFLVQNNGKKIMVYFA 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,736,189
Number of Sequences: 37544
Number of extensions: 269343
Number of successful extensions: 773
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)