Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6n01
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha... 213 2e-56
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy... 27 1.9
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 26 4.5
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 26 4.5
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 26 4.5
SPBC14C8.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 4.5
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 25 7.8
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 25 7.8
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo... 25 7.8
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb... 25 7.8
>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 213 bits (521), Expect = 2e-56
Identities = 99/158 (62%), Positives = 113/158 (71%)
Frame = +1
Query: 187 EYQGKLKREKGESERLRLPPWLKTTIPTGSKFNEIKQQLRSLKLSTVCEEARCPNIGECW 366
E K++ G + RLP WLKT +P G+ FN IK LR L TVCEEA+CPNIGECW
Sbjct: 54 ELDRKVELPNGSIHK-RLPSWLKTKVPLGTNFNRIKHDLRGSHLHTVCEEAKCPNIGECW 112
Query: 367 SGGKHGASTATIMLMGDTCTRGCMFCSVKTSRNPPPLDPEEPRNTAHAINQWGVGYIVLT 546
G +TATIMLMGDTCTRGC FCSVKTSR P PLDP EP NTA AI QW +GYIVLT
Sbjct: 113 GGKDKSRATATIMLMGDTCTRGCRFCSVKTSRRPGPLDPNEPENTAEAIKQWNLGYIVLT 172
Query: 547 SVDRDDLPDGGSLHFAETVKEIKKLNKDILVECLVPDF 660
SVDRDDL D G+ H A+T+++IK+ ILVE L PDF
Sbjct: 173 SVDRDDLTDLGANHIAKTIQKIKEKAPHILVEALTPDF 210
>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -2
Query: 623 LSFLISLTVSAKCSEPP-SGKSSLSTEVSTIY--PTPHWLIACAVFL 492
+SFLI+L + A S PP G+ L+ + ++ W + C +F+
Sbjct: 44 MSFLIALVLIAASSIPPLLGQDPLALLIGAVWGLNVGFWTVVCGIFI 90
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 611 ISLTVSAKCSEPPSGKS 561
+ + VSAK SEPPS KS
Sbjct: 60 LKMEVSAKISEPPSSKS 76
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 148 SHQTFGHRPKNWDEYQGKLKREKGESERLRL 240
S FG R ++W Y L E+ E ER +L
Sbjct: 503 SEDNFGARDEDWKVYHDVLTAEQLEEERKKL 533
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2
Query: 677 SPRTARKSGTRHSTRMSLLSFLISLTVSAKCSEPPSGKSSLSTEVSTIYP 528
+P T+ S + T S S + A +E S S+ STEV++ YP
Sbjct: 135 TPETSATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASSTEVTSSYP 184
>SPBC14C8.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 490 PRNTAHAINQWGVGYIVLTSVDRDDLPDGGSLHFA 594
PR+ H N+ + Y+ T+ D LP+GG+ A
Sbjct: 15 PRSVCHVRNRENI-YLYWTTFDAHKLPNGGNADMA 48
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/56 (23%), Positives = 21/56 (37%)
Frame = -2
Query: 410 INMMVAVDAPCFPPLQHSPILGHLASSQTVLSFKLRNCCFISLNFEPVGIVVFNHG 243
I+++ P F P QH + + + KL N +N P+ V G
Sbjct: 237 IHIIALKSPPLFSPYQHLLYVAEASGLLEIYDLKLENKLVSGMNLSPIFKQVLREG 292
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 325 VCEEARCPNIGECWSGGKHGA 387
+C+E IGE W GKHG+
Sbjct: 1204 ICQEGE---IGEIWINGKHGS 1221
>SPCC594.04c |||steroid oxidoreductase superfamily
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 187 HPNFLDDVQMFGDFILFNCVANHGYYNF 104
HPNFL + ++ F LF +A+ N+
Sbjct: 250 HPNFLAEQLIWLSFYLFGAIASESLLNW 277
>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 184 DEYQGKLKREKGESERLRLPP 246
D Y K + + G +ER RLPP
Sbjct: 418 DSYSQKWQEQTGWTERFRLPP 438
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,322
Number of Sequences: 5004
Number of extensions: 60268
Number of successful extensions: 214
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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