Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6m24
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   166   3e-42
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   164   1e-41
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    95   1e-20
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    73   5e-14
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    31   0.14 
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    26   5.1  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    25   9.0  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   9.0  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  166 bits (403), Expect = 3e-42
 Identities = 69/114 (60%), Positives = 91/114 (79%)
 Frame = +3

Query: 285 MTASIRFKGSLNVDLVEFKTNLIPFPRIHFPLVTFAPFVSPSRACHETMTTNQLMMSCFE 464
           +TAS+RF+GSLNVDL EF+TNL+P+PRIHFPLVT+AP VS ++A HE+ +  ++   CFE
Sbjct: 238 ITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFE 297

Query: 465 PANQMVKCDPRKGQYISCCLLFRGDVNPNDINATINHVKNSRSIKFVSWSPTGF 626
           P NQMVKCDPR G+Y++ CLL+RGDV P D+ A +  +K  R+I+FV W PTGF
Sbjct: 298 PYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGF 351



 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 43/75 (57%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
 Frame = +2

Query: 59  MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL----AFPDNDNSCGHFFSETGAGK 226
           M+EI+ IH+GQAG Q  NACWELYCLEHGI+P+G +    A  ++D     FFSETG GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 227 FVPRVVMIDLEPTPI 271
           +VPR + +DLEP  I
Sbjct: 61  YVPRSIYVDLEPNVI 75


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  164 bits (398), Expect = 1e-41
 Identities = 68/114 (59%), Positives = 91/114 (79%)
 Frame = +3

Query: 285 MTASIRFKGSLNVDLVEFKTNLIPFPRIHFPLVTFAPFVSPSRACHETMTTNQLMMSCFE 464
           +TAS+RF GSLNVDL EF+TNL+P+PRIHFPLVT++P VS ++A HE+ +  ++   CFE
Sbjct: 242 ITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFE 301

Query: 465 PANQMVKCDPRKGQYISCCLLFRGDVNPNDINATINHVKNSRSIKFVSWSPTGF 626
           P NQMVKCDPR G+Y++ CLL+RGDV P D+ A +  +K+ R+I+FV W PTGF
Sbjct: 302 PYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGF 355



 Score = 92.7 bits (220), Expect = 4e-20
 Identities = 44/79 (55%), Positives = 54/79 (68%), Gaps = 8/79 (10%)
 Frame = +2

Query: 59  MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGV-----LAFPDN---DNSCGHFFSET 214
           M+E++ +H+GQAGVQ  NACWELYCLEHGI PDG          +N   ++  G FFSET
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 215 GAGKFVPRVVMIDLEPTPI 271
           G GKFVPR + +DLEP  I
Sbjct: 61  GQGKFVPRSIYVDLEPNVI 79


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 94.7 bits (225), Expect = 1e-20
 Identities = 42/111 (37%), Positives = 63/111 (56%)
 Frame = +3

Query: 285 MTASIRFKGSLNVDLVEFKTNLIPFPRIHFPLVTFAPFVSPSRACHETMTTNQLMMSCFE 464
           +T S RF G LN DL +   N++PFPR+HF +V FAP  +   +  + ++  +L    F+
Sbjct: 236 VTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFD 295

Query: 465 PANQMVKCDPRKGQYISCCLLFRGDVNPNDINATINHVKNSRSIKFVSWSP 617
             N MV  DPR G+Y++   LFRG V+  +++  I  V+   S  FV W P
Sbjct: 296 ANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIP 346



 Score = 55.6 bits (128), Expect = 6e-09
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +2

Query: 59  MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL--AFPDNDNSCGHFFSETGAGKFV 232
           M+EI+HI  GQ G Q   A W     EHG+   G+              +F+E   GK+V
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 233 PRVVMIDLEP 262
           PR V++DLEP
Sbjct: 61  PRAVLVDLEP 70


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 72.5 bits (170), Expect = 5e-14
 Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
 Frame = +3

Query: 288 TASIRFKGSLNVDLVEFKTNLIPFPRIHFPLVTFAPF----VSPSRACHETMTTNQLMMS 455
           T ++R+ G +N DLV    +LIP PR HF L ++ PF    V  ++A  +T T   +M  
Sbjct: 240 TTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKT-TVLDVMRR 298

Query: 456 CFEPANQMVKCDP-RKGQYISCCLLFRGDVNPNDINATINHVKNSRSIKFVSWSP 617
              P NQMV  +P +K  +IS   + +G+ +P D++ ++  ++  R   F+ W P
Sbjct: 299 LLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGP 353



 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
 Frame = +2

Query: 62  KEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL-AF-PDNDNSCGHFFSETGAGKFVP 235
           +EI+ +  GQ G Q  +  W+  CLEHGI PDG L +F  +  +    FF ++   +++P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 236 RVVMIDLEPTPIGCFLHDCFDKI 304
           R ++IDLEP  +   L D +  +
Sbjct: 63  RAILIDLEPRVVNNILSDTYGSL 85


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 272 GCFLHDCFDKIQRFSERRSRRI*NKLNSISTDTFSISNICAIC 400
           G F HD ++KI        +++ N+L SI T+TF   +I   C
Sbjct: 27  GGFKHDLYEKIIAIEIEVEKKLLNRLKSIQTNTFERPDIIWSC 69


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 78  YTLDKPVCKPLTPVGNCIVLNT 143
           Y LD  + + +TP   CIVLNT
Sbjct: 96  YNLDTAIKEVVTPGHTCIVLNT 117


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 248 IDLEPTPIGCFLHDCFD 298
           I LEP PI C +H  F+
Sbjct: 795 IPLEPLPINCLMHKKFE 811


>SPAC2F7.03c |pom1||DYRK family protein kinase
            Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 98   HRLVQCVCVEFLSFSINHCKFW 33
            H+++QC  V FLSF I+ C  W
Sbjct: 958  HQVLQCKDVSFLSF-ISDCLKW 978


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,686
Number of Sequences: 5004
Number of extensions: 54034
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)