Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6m24
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.8  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -3

Query: 377 WKMYPWKW 354
           W+ YPW+W
Sbjct: 95  WQQYPWQW 102


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 439 FVVIVSWHAREGE 401
           FV ++SWH  +GE
Sbjct: 133 FVKVLSWHTDQGE 145


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 245 SQLEARIFQHRFH*KNVHNYYHYQEMLELHPVLSRV 138
           S L  R+FQ   + +++ + YH  E   +H +L  +
Sbjct: 309 SSLAFRVFQSTQYIRHIKSPYHTPEPDCIHELLGHM 344


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 547 GFTSPLNNKQHDMYCP 500
           G+ SP++   +D Y P
Sbjct: 131 GYASPMSTSSYDPYSP 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,305
Number of Sequences: 438
Number of extensions: 3822
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)