Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6m23
(336 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 29 0.19
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 29 0.19
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 27 0.58
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 27 0.77
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 27 0.77
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.0
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 25 2.3
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 25 3.1
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 25 3.1
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 25 4.1
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 25 4.1
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 4.1
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 24 5.4
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 24 5.4
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 24 5.4
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy... 24 5.4
SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3... 24 5.4
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 24 5.4
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 24 5.4
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 24 5.4
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 24 7.1
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 24 7.1
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 24 7.1
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 24 7.1
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 24 7.1
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 24 7.1
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 23 9.4
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy... 23 9.4
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 29.1 bits (62), Expect = 0.19
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 51 LRLQRSSAICWKCGVQCPVWWSS 119
LR QR + +C+ CG + P W S+
Sbjct: 15 LRSQRDNKVCFDCGAKNPTWSST 37
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 29.1 bits (62), Expect = 0.19
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = +1
Query: 94 CNAPCGGPAGYGDVAVSGELPVGGNTGVCGNVPVVGYVMFEGTVPAGGLVSVANNCGCNG 273
C CG G+G V S ++ G V G VG +G V AG +A + +
Sbjct: 172 CLLGCGVTTGFGAVTHSAKVESGSTVAVVG-CGCVGLAAMQGAVAAGASRIIAIDINADK 230
Query: 274 PAY 282
Y
Sbjct: 231 EVY 233
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 27.5 bits (58), Expect = 0.58
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 67 RQPYAGNVGCNAPCGGPAGYGDVAVSGELPVGGNTGVCGNVP 192
+QPY G +AP A + D+ VS + V C N P
Sbjct: 293 QQPYVDTPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTNSP 334
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.1 bits (57), Expect = 0.77
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 260 QLLATLTNPPAGTVPSNITYPTTGTFPQTPV 168
QLL+ L + T PS++ P TFPQ PV
Sbjct: 259 QLLSLLKS---STAPSDLATPQPSTFPQPPV 286
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 0.77
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 94 CNAPCGGPAGYGDVAVSGELPVGGNTGVCGNVPVVGYVMFEGTV 225
C CG GYG ++ ++ G + V G + VG + +G V
Sbjct: 175 CLLGCGITTGYGAATITADIKEGDSVAVFG-LGSVGLAVIQGAV 217
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 1.0
Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Frame = -2
Query: 236 PPAG--TVPSNITYPTTGTF-PQTPVLPPTGNSPDTATSXXXXXXXXXXXXPTFPAYG*R 66
PP G T P T P T T TP P + +S T++S + P G
Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNS 351
Query: 65 TLQAQPGFPST 33
T P P T
Sbjct: 352 TTPVTPTVPPT 362
Score = 26.6 bits (56), Expect = 1.0
Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Frame = -2
Query: 236 PPAG--TVPSNITYPTTGTF-PQTPVLPPTGNSPDTATSXXXXXXXXXXXXPTFPAYG*R 66
PP G T P T P T T TP P + +S T++S + P G
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNS 405
Query: 65 TLQAQPGFPST 33
T P P T
Sbjct: 406 TTPVTPTVPPT 416
Score = 25.4 bits (53), Expect = 2.3
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -2
Query: 215 SNITYPTTG--TFPQTPVLPPTGNSPDTATS 129
++ + P TG T P TP +PPT +S T+
Sbjct: 395 TSTSIPPTGNSTTPVTPTVPPTSSSTPLTTT 425
Score = 23.8 bits (49), Expect = 7.1
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -2
Query: 215 SNITYPTTG--TFPQTPVLPPTGNS 147
++ + P TG T P TP +PPT S
Sbjct: 287 TSTSIPPTGNSTTPVTPTVPPTSTS 311
Score = 23.8 bits (49), Expect = 7.1
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -2
Query: 215 SNITYPTTG--TFPQTPVLPPTGNS 147
++ + P TG T P TP +PPT S
Sbjct: 341 TSTSIPPTGNSTTPVTPTVPPTSTS 365
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 25.4 bits (53), Expect = 2.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 215 SNITYPTTGTFPQTPVLPPTGNSPD 141
+NIT T PQ V+ P G +P+
Sbjct: 480 ANITEAAIATLPQETVVQPEGEAPE 504
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.0 bits (52), Expect = 3.1
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -3
Query: 289 KINTQDRCIRSCWPRSPILQPALYPRTSHIPLQARSR 179
KIN P P++QP +P S I R+R
Sbjct: 430 KINISTESPSVAMPSIPVIQPPSFPIFSSIDFNVRNR 466
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 3.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 149 NCPWVATLASAGTCL*WDM*CSRVQCRL 232
N W+AT +S GT W R++C L
Sbjct: 65 NKRWIATSSSDGTIKIWSALTFRLECTL 92
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 24.6 bits (51), Expect = 4.1
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Frame = -3
Query: 187 RSRRRQCCHPRAIHPTRPHRRSQ-----LDHHTGHCTPHFQHMADERCKR 53
R RR++ R+ H HRR + L H H T ++ D+R +R
Sbjct: 134 RHRRKEKERTRSNHRHGSHRRHEPYRTHLSRHHRHSTTNYHSKRDDRYER 183
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 24.6 bits (51), Expect = 4.1
Identities = 9/37 (24%), Positives = 21/37 (56%)
Frame = -2
Query: 242 TNPPAGTVPSNITYPTTGTFPQTPVLPPTGNSPDTAT 132
+ P +VP++ + + T P T +P T ++P +++
Sbjct: 96 STPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSS 132
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 24.6 bits (51), Expect = 4.1
Identities = 16/51 (31%), Positives = 20/51 (39%)
Frame = -2
Query: 281 YAGPLHPQLLATLTNPPAGTVPSNITYPTTGTFPQTPVLPPTGNSPDTATS 129
Y G + T T GT I PTT T +T ++ T T TS
Sbjct: 848 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETS 898
Score = 24.6 bits (51), Expect = 4.1
Identities = 16/51 (31%), Positives = 20/51 (39%)
Frame = -2
Query: 281 YAGPLHPQLLATLTNPPAGTVPSNITYPTTGTFPQTPVLPPTGNSPDTATS 129
Y G + T T GT I PTT T +T ++ T T TS
Sbjct: 892 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETS 942
Score = 24.6 bits (51), Expect = 4.1
Identities = 16/51 (31%), Positives = 20/51 (39%)
Frame = -2
Query: 281 YAGPLHPQLLATLTNPPAGTVPSNITYPTTGTFPQTPVLPPTGNSPDTATS 129
Y G + T T GT I PTT T +T ++ T T TS
Sbjct: 936 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETS 986
Score = 24.6 bits (51), Expect = 4.1
Identities = 16/51 (31%), Positives = 20/51 (39%)
Frame = -2
Query: 281 YAGPLHPQLLATLTNPPAGTVPSNITYPTTGTFPQTPVLPPTGNSPDTATS 129
Y G + T T GT I PTT T +T ++ T T TS
Sbjct: 980 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETS 1030
Score = 24.6 bits (51), Expect = 4.1
Identities = 16/51 (31%), Positives = 20/51 (39%)
Frame = -2
Query: 281 YAGPLHPQLLATLTNPPAGTVPSNITYPTTGTFPQTPVLPPTGNSPDTATS 129
Y G + T T GT I PTT T +T ++ T T TS
Sbjct: 1024 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETS 1074
Score = 24.6 bits (51), Expect = 4.1
Identities = 16/51 (31%), Positives = 20/51 (39%)
Frame = -2
Query: 281 YAGPLHPQLLATLTNPPAGTVPSNITYPTTGTFPQTPVLPPTGNSPDTATS 129
Y G + T T GT I PTT T +T ++ T T TS
Sbjct: 1068 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETS 1118
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 24.2 bits (50), Expect = 5.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 250 PRSPILQPALYPRTSHIPLQARSRR 176
P SP+ PA P S +PL R+
Sbjct: 45 PASPVTAPAAQPVESSVPLPLPKRK 69
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 242 TNPPAGTVPSNITYPTTGTFPQTPVLPPTGNSPDTATS 129
TN + + P T T+GT P T + P S + T+
Sbjct: 37 TNQVSVSCPKYTTIYTSGTSPDTKTIYPESTSTKSITT 74
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 24.2 bits (50), Expect = 5.4
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = +3
Query: 54 RLQRSSAICWKCGVQCPVWW 113
++ R +C+ CGV C W
Sbjct: 185 KVPRVDKVCFTCGVNCSQTW 204
>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 375
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -2
Query: 281 YAGPLHPQLLATLTNPPAGTVPSNITYPTTGTFPQTPVLPP 159
Y PLH + T+T+ T + +T T T + L P
Sbjct: 57 YTEPLHTSVSETITSTSFVTETTTVTPTVTATAQELSTLNP 97
>SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 158
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 7 VKYMNA-LSQVLGNPGCACNVRQPYAGNVGCNAPCGGPAGY 126
++Y N ++ +LG G +QP A + ++P GP Y
Sbjct: 76 IQYANGVITLMLGEKGTYVINKQPPAHQIWLSSPVSGPKHY 116
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 24.2 bits (50), Expect = 5.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 136 PHRRSQLDHHTGHCTPHFQHMAD 68
P RRS L H+ + + FQH D
Sbjct: 426 PSRRSILQEHSLYASESFQHKLD 448
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 24.2 bits (50), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 240 QSSSRHCTLE-HHISHYRHVPADASV 166
+ S C +E +H+ YRH+P ASV
Sbjct: 340 EGDSSGCIIEDNHVFKYRHLPYLASV 365
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 242 TNPPAGTVPSNITYPTTGTFPQTPVLPPTGNSPDTATS 129
TN + + P T T+GT P T + P S + T+
Sbjct: 37 TNQVSVSCPKYTTIYTSGTSPDTKTIYPESTSTKSITT 74
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 23.8 bits (49), Expect = 7.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 257 LLATLTNPPAGTVPSNITYPTTGTFPQTPVLPPT 156
+L T GTV + ITY ++ T T V+ PT
Sbjct: 969 ILPAPTTIYTGTVATTITYSSSSTPVSTVVVIPT 1002
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 23.8 bits (49), Expect = 7.1
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 6 RQIHERSFPSTWKPG 50
RQ E PSTW PG
Sbjct: 6 RQTFEYQMPSTWYPG 20
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 23.8 bits (49), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +3
Query: 54 RLQRSSAICW--KCGVQCPVWWSSWL 125
R Q S AI + C ++ P +WS+WL
Sbjct: 186 RKQDSKAIDFLKSCVLKAPFFWSAWL 211
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 23.8 bits (49), Expect = 7.1
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 272 PLHPQLLATLTNPPAGTVPSNITYPTTGTFPQTPVLP 162
P+ P + PP G V ++ + P T P PV+P
Sbjct: 280 PMGPGGAPLVPPPPPGMVMASPS-PAAATIPGAPVMP 315
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 23.8 bits (49), Expect = 7.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 230 AGTVPSNITYPTTGTFPQTPVLPPT 156
+GTV + ITY + T T V+ PT
Sbjct: 366 SGTVATTITYDVSSTPASTVVVIPT 390
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 23.8 bits (49), Expect = 7.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 163 GNTGVCGNVPVVGYVMFEGTVPAGGLVSV 249
G+TG GN V+ + G + A G ++V
Sbjct: 390 GSTGFLGNATVIAILALGGRMVAAGDITV 418
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 23.4 bits (48), Expect = 9.4
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -3
Query: 247 RSPILQPALYPRTSHIPLQARSRRRQCCHPRAIHPTRPHRRSQLDH 110
RSP ++ S P+++R R R R+ HP+ R D+
Sbjct: 129 RSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDY 174
>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 215
Score = 23.4 bits (48), Expect = 9.4
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = -3
Query: 178 RRQCCHPRAIHPTRPHRRSQLDHHTGHCTPHFQHMADERC 59
RR+CCHP T + L + C H + M D C
Sbjct: 147 RRRCCHPTCTRITLRLAGNCLHCNGRFCAAH-RLMEDHDC 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,511,573
Number of Sequences: 5004
Number of extensions: 32322
Number of successful extensions: 146
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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