Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6m23
         (336 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   0.75 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.0  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    21   4.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   5.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      20   7.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   7.0  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 0.75
 Identities = 15/54 (27%), Positives = 20/54 (37%)
 Frame = -3

Query: 235 LQPALYPRTSHIPLQARSRRRQCCHPRAIHPTRPHRRSQLDHHTGHCTPHFQHM 74
           L P+ +P   H P Q    R    H +  + T         HH  H T   QH+
Sbjct: 312 LPPSYHPHQHH-PSQYHPHRGSSPHHQHGNHTMGPTMGPPHHHHHHQTQSLQHL 364


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 151 IHPTRPHRRSQLDHHTGHCTPHFQH 77
           IH T PH      HH+   TPH QH
Sbjct: 426 IHAT-PHH-----HHSHAATPHHQH 444



 Score = 22.2 bits (45), Expect = 1.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 255 VGHAHQSSSRHCTLEHHISH 196
           +GH H  S  H T  HH SH
Sbjct: 419 MGHGH--SHIHATPHHHHSH 436


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 1   GCVKYMNALSQVLGNPGCACNVRQPY 78
           G    +N +S+ +GN GC   + QPY
Sbjct: 89  GVPSSLNVISEKIGNGGC---LLQPY 111


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 281 YAGPLHPQLLATLTNPPAGTVPS 213
           Y   +H Q+ + L   PAG+V S
Sbjct: 70  YRQEVHAQVYSCLARSPAGSVHS 92


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 201 ICDVRGYSAGWRIGERGQQL 260
           +C    YS GW  G+R   L
Sbjct: 20  MCQTFTYSHGWTNGKRSTSL 39


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 182 PQTPVLPPTGNSPDTA 135
           P  P  PP+ + PD+A
Sbjct: 341 PAPPPPPPSSSGPDSA 356


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 100 HCTPHFQHMADERCKRNPGFQVL 32
           HC       AD+  +RNP   VL
Sbjct: 309 HCNMENTEGADDASERNPRSAVL 331


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = -2

Query: 239 NPPAGTVPSNITYPTTGTFPQTPVLPPTGNSPDTAT 132
           +PPA +     T  TT T   T        +  TAT
Sbjct: 95  HPPASSTSLPATITTTTTTTTTTTATAAATATTTAT 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,356
Number of Sequences: 438
Number of extensions: 2829
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)