Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6m18
         (107 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200...    29   0.53 
01_01_1083 - 8519987-8520254,8520442-8520554                           25   6.6  

>11_04_0236 +
           15215386-15216197,15216854-15218888,15219131-15220017,
           15222420-15226194
          Length = 2502

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 82  LSILACNIELNAIKHTCTKAGVFXK 8
           L + +CNI +  IKHTC   G F K
Sbjct: 806 LELQSCNIRVVNIKHTCGDIGYFQK 830


>01_01_1083 - 8519987-8520254,8520442-8520554
          Length = 126

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 87  WVYPFWLVISSLMQLSTRAPKL 22
           W Y FWL++  L+  +  APK+
Sbjct: 104 WKYLFWLILLGLVASNYIAPKM 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,749
Number of Sequences: 37544
Number of extensions: 22701
Number of successful extensions: 68
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 14,793,348
effective HSP length: 16
effective length of database: 14,192,644
effective search space used: 269660236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)