Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6m15
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 30 0.24
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 28 1.3
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 27 2.2
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 26 3.8
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 26 5.1
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 5.1
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos... 26 5.1
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 25 6.7
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.7
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 30.3 bits (65), Expect = 0.24
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 394 QLDDDANGNVDLSESDDFLRE-ELQYDSGYEKRQRAFHHNDDMHISVKELWEAWLXSEV 567
QLD++ + V+ SE ++ RE E DS Y + + A + DD+++ V W W+ + +
Sbjct: 106 QLDNETDSEVE-SEVEELERELEAIEDSVYPEVRAAVNPTDDVNLPV-NTWRTWVLTTI 162
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Frame = +1
Query: 280 TDPAFTASNDQILLEACQNDASCLQDHAGLEAITLLHRQLDDDANGNVDLSESD------ 441
++ F + D+IL +A + + + + E + L ++D N +LSE++
Sbjct: 40 SEDEFYNAQDKILFDADNGEQADELELSDEELVALESSSDEEDGNAEENLSENEELSGKK 99
Query: 442 -DFLREELQYDS-GYEKRQRAFHHNDD 516
D + EE YD+ G+ + ++++ DD
Sbjct: 100 KDAVNEEELYDNKGWGRSAKSYYGGDD 126
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 406 DANGNVDLSESDDFLREELQYDSGYEKRQRAFHHNDDMHISVK 534
DAN + E DD EE + +SG +R+RA H + + ++
Sbjct: 108 DANEEEEEDEEDDEEDEEDEDESGGGRRKRARHDRRNQFLDIE 150
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = +1
Query: 394 QLDDDANGNVDLSESDDFLREELQYDSGYEKRQRAFHHNDDMHISVKELWEAWLXSEVHN 573
Q + N +D E D+F EELQ ++RQ H + + K W H+
Sbjct: 363 QEESHVNKGIDFDELDNFAEEELQ-----KQRQNTDHFRSRQYSTCKPFEPHWNDLSPHD 417
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -1
Query: 259 PLDPTSPAF-HHLFLSSRHRQLYT 191
P +P SP H+LF S ++ Q YT
Sbjct: 396 PRNPGSPCISHYLFYSKKYSQFYT 419
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 25.8 bits (54), Expect = 5.1
Identities = 21/98 (21%), Positives = 50/98 (51%)
Frame = +1
Query: 331 QNDASCLQDHAGLEAITLLHRQLDDDANGNVDLSESDDFLREELQYDSGYEKRQRAFHHN 510
QN+ ++++A + ITL +QL + + +++++D L E+ YD YE+ +
Sbjct: 98 QNEIGIIEENAVEQEITLQQQQLLAEKDEENEIADND--LEPEV-YDILYEEESKLGESR 154
Query: 511 DDMHISVKELWEAWLXSEVHNWTVEQTVEWLSESVDPS 624
D ++ L + ++ +N++V+++ + D S
Sbjct: 155 D----LIRRLKQKRFETKKNNFSVKESSNLSNNDSDAS 188
>SPCC737.04 |||S. pombe specific UPF0300 family protein
6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 5.1
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +1
Query: 391 RQLDDDANGNVDLSESDDFLREELQYDSGYEKRQRAFHH----NDDMHISVKELWEAWLX 558
R++DD+ N L ++ +++ + D GY+ R+ ++ D++I+V + WL
Sbjct: 13 REVDDEGQENSFLRKTTRKIQQFFKSDPGYQSRKAEYNSPAKATGDVNINVTS--QDWLS 70
Query: 559 SEVHNWTVE 585
N ++E
Sbjct: 71 KLDRNLSIE 79
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 370 EAITLLHRQLDDDANGNVDLSESDD 444
+++ LL Q+DD A + LS SDD
Sbjct: 1089 DSVMLLKNQIDDLAKEKLPLSSSDD 1113
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 6.7
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = -3
Query: 416 PLASSSSCRCKSVMASNPAWSCRHDASF*HASSNI*SFEAVKAGSVTKEPLRTTGPHFSR 237
P +SS++ S +S P S + ASS++ S A +GS++ +T +
Sbjct: 149 PSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSADAKTVSASSNS 208
Query: 236 LPPSFSVLSASSA 198
FS + S++
Sbjct: 209 TISGFSTSTTSAS 221
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,983
Number of Sequences: 5004
Number of extensions: 53867
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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