Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6m09
         (178 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I3C8 Cluster: Putative uncharacterized protein PFI009...    31   6.7  
UniRef50_Q4YAW4 Cluster: Putative uncharacterized protein; n=4; ...    31   6.7  
UniRef50_Q494B1 Cluster: Glycine-tRNA synthetase, beta subunit; ...    30   8.8  

>UniRef50_Q8I3C8 Cluster: Putative uncharacterized protein PFI0095c;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFI0095c - Plasmodium falciparum
           (isolate 3D7)
          Length = 569

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 132 LYTSIFCTP*KE--NRYKVFFKYLTLHFWVRLENC 34
           +Y SI C+P     N  KVF K + +  W++L NC
Sbjct: 221 MYKSIICSPKGNSINNTKVFIKKINIKDWLKLFNC 255


>UniRef50_Q4YAW4 Cluster: Putative uncharacterized protein; n=4;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 816

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +3

Query: 3   LDNVVSFWKNNNFLILPKNVMLNI*KKLYTYFPFREYKIL 122
           L  + +F  N N ++ PKN++++  K+L  Y P+  Y ++
Sbjct: 525 LQKINNFDNNTNIVLTPKNILIDD-KRLANYVPYVNYNLI 563


>UniRef50_Q494B1 Cluster: Glycine-tRNA synthetase, beta subunit;
           n=1; Candidatus Blochmannia pennsylvanicus str.
           BPEN|Rep: Glycine-tRNA synthetase, beta subunit -
           Blochmannia pennsylvanicus (strain BPEN)
          Length = 695

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 30  NNNFLILPKNVMLNI*KKLYTYFP 101
           NN FL+LP+ V+L+I K    YFP
Sbjct: 268 NNKFLVLPREVILHIMKYDQKYFP 291


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,242,129
Number of Sequences: 1657284
Number of extensions: 2579579
Number of successful extensions: 4890
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4888
length of database: 575,637,011
effective HSP length: 38
effective length of database: 512,660,219
effective search space used: 10253204380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)