Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6m09
         (178 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   0.76 
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    23   4.1  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    22   9.4  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    22   9.4  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    22   9.4  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    22   9.4  

>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 73  FKKNFIPIFLLGSTKY*CVQSEC 141
           F+K F+ +FLLG T Y C    C
Sbjct: 63  FRKRFLLLFLLGITGYSCSVVYC 85


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 12  VVSFWKNNNFLILPKNVMLN 71
           V+  + NNN  +LPK V L+
Sbjct: 388 VLGHFSNNNINVLPKEVQLS 407


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 6   DNVVSFWKNNNF 41
           D  +S W NNNF
Sbjct: 312 DKAISGWSNNNF 323


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 73  IFNITFLGKIRKLLFFQKETTLSN 2
           I N   LG+I       KETT S+
Sbjct: 399 IHNFPLLGRIHNFFSVAKETTFSS 422


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 14  SFFLEE*QFSNLTQKCNVKYLKKTL 88
           SFF     +  +  +C   YL KTL
Sbjct: 291 SFFEHHPAYRTIKDRCGTPYLAKTL 315


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 6   DNVVSFWKNNNF 41
           D  +S W NNNF
Sbjct: 312 DKAISGWSNNNF 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 765,622
Number of Sequences: 5004
Number of extensions: 12529
Number of successful extensions: 24
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 39
effective length of database: 2,167,322
effective search space used: 41179118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)