Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6m09
         (178 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1186 - 10195175-10195621,10195882-10195930,10196019-101961...    27   1.6  
06_01_0915 - 7054701-7055809,7056062-7056359                           27   2.1  
06_01_0024 + 233101-233189,233259-233340,233430-233493,233636-23...    26   3.7  

>06_01_1186 -
           10195175-10195621,10195882-10195930,10196019-10196168,
           10196513-10196658,10196877-10196914,10197000-10197216,
           10197393-10197611,10197753-10197879,10198631-10198812,
           10198928-10199131,10199773-10199782,10200789-10200815,
           10201072-10201132,10201731-10201851
          Length = 665

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 72  YLTLHFWVRLENCYSSKKKL 13
           +L LHFW+R   C S +++L
Sbjct: 603 HLLLHFWIRSSRCPSHRREL 622


>06_01_0915 - 7054701-7055809,7056062-7056359
          Length = 468

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -3

Query: 152 FIKSHSLCTHQYFVLPKRKI 93
           F+++H L   Q+F+LPKR++
Sbjct: 6   FVQNHHLQNSQFFLLPKRQL 25


>06_01_0024 +
           233101-233189,233259-233340,233430-233493,233636-233826,
           233901-233978,234133-234207,234436-234506,234710-234826,
           234915-235016,235196-235316,235451-235537,235708-235794,
           236237-236338,236629-236692,237554-237580,237581-237636,
           238185-238256,238540-238622,238953-239001,239335-239397,
           239633-239722,239823-239909,240072-240146,240222-240280,
           240511-240604,240681-240899,240998-241092,241504-241594,
           241663-241767,241847-241885,242263-242352,242538-242639,
           242837-242918,243075-243160,243264-243362
          Length = 1030

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 36  NFLILPKNVMLNI*KKLYTYFP 101
           +FL LPK+V++ + +K   YFP
Sbjct: 608 SFLALPKDVLITVMQKHQKYFP 629


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,848,621
Number of Sequences: 37544
Number of extensions: 52348
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 14,793,348
effective HSP length: 38
effective length of database: 13,366,676
effective search space used: 267333520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)