Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6m09
         (178 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport...    25   5.4  
Z81533-4|CAB04338.1|  280|Caenorhabditis elegans Hypothetical pr...    25   7.1  

>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
            family protein 2 protein.
          Length = 1551

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 149  IKSHSLCTHQYFVLPKRKIGIKFF 78
            I +H++C+  + VLP+  +GI  F
Sbjct: 1072 IPAHTVCSIVFLVLPQYNLGIAIF 1095


>Z81533-4|CAB04338.1|  280|Caenorhabditis elegans Hypothetical
           protein F36G9.7 protein.
          Length = 280

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 81  FFKYLTLHFWVRLENCYSS 25
           +++YL  H+W  L  CY+S
Sbjct: 243 YYEYLCTHYWTNL-TCYTS 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,084,896
Number of Sequences: 27780
Number of extensions: 66723
Number of successful extensions: 141
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 12,740,198
effective HSP length: 39
effective length of database: 11,656,778
effective search space used: 221478782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)