Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6m09
         (178 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    20   2.4  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    20   2.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    19   5.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    19   7.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    19   7.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    19   7.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    19   7.3  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 30  NNNFLILPKNVMLNI 74
           NNN+  L KN ++NI
Sbjct: 110 NNNYKKLYKNYIINI 124


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 30  NNNFLILPKNVMLNI 74
           NNN+  L KN ++NI
Sbjct: 110 NNNYKKLYKNYIINI 124


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 12  VVSFWKNNNFLILPKNVMLNI*KKLYT 92
           +++F KNN  + + K V      K+YT
Sbjct: 506 LINFSKNNTIVDISKLVNKRNNAKIYT 532


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +3

Query: 15  VSFWKNNNFLILPKNVMLNI 74
           VSFW N N    P  V L +
Sbjct: 240 VSFWLNRN--ATPARVALGV 257


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +3

Query: 15  VSFWKNNNFLILPKNVMLNI 74
           VSFW N N    P  V L +
Sbjct: 240 VSFWLNRN--ATPARVALGV 257


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -2

Query: 126 TSIFCTP*KENRYKVFFKYLTLHFWVRLENCYSSKKKLHYLT 1
           T +FC     +R       L+ +F   L + Y +KK+  ++T
Sbjct: 344 TMVFCNDLSIDRSTNTMYVLSDNFQQLLFSKYDAKKRNFFIT 385


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +3

Query: 15  VSFWKNNNFLILPKNVMLNI 74
           VSFW N N    P  V L +
Sbjct: 179 VSFWLNRN--ATPARVALGV 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,983
Number of Sequences: 438
Number of extensions: 856
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 38
effective length of database: 129,699
effective search space used:  2593980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)