Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6m08
(609 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006774-5|AAF60618.1| 363|Caenorhabditis elegans Hypothetical ... 33 0.12
U40029-1|AAA81123.3| 360|Caenorhabditis elegans Serpentine rece... 33 0.16
Z93778-7|CAB07847.1| 800|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z81532-9|CAB04328.1| 800|Caenorhabditis elegans Hypothetical pr... 30 1.5
U73476-1|AAB41492.1| 800|Caenorhabditis elegans cyclic nucleoti... 30 1.5
AJ131742-1|CAA10498.1| 590|Caenorhabditis elegans protein ( Cae... 28 4.5
AF098989-4|AAK18956.2| 590|Caenorhabditis elegans Dystrobrevin ... 28 4.5
AF067942-6|AAG45579.1| 345|Caenorhabditis elegans Hypothetical ... 28 4.5
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with... 28 6.0
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with... 28 6.0
U55364-14|AAA97979.1| 210|Caenorhabditis elegans Hypothetical p... 28 6.0
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi... 28 6.0
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei... 27 7.9
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical... 27 7.9
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ... 27 7.9
AC006665-3|AAF39905.1| 605|Caenorhabditis elegans Hypothetical ... 27 7.9
>AC006774-5|AAF60618.1| 363|Caenorhabditis elegans Hypothetical
protein Y46H3A.4 protein.
Length = 363
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 1 GSSIIPFLSNHHKNALNFFVDHYFKSLRRITMTSLNEQIEHPSFFW 138
G S+ PF + HK N +D ++K+ + + +++ HP F W
Sbjct: 180 GRSVFPFNFDDHKTYFNVAIDDWWKNGFKFCHLAADKKFGHPIFIW 225
>U40029-1|AAA81123.3| 360|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 39 protein.
Length = 360
Score = 33.1 bits (72), Expect = 0.16
Identities = 27/102 (26%), Positives = 42/102 (41%)
Frame = +1
Query: 19 FLSNHHKNALNFFVDHYFKSLRRITMTSLNEQIEHPSFFWNCLALQDDCPFYSSIDPKLY 198
F+ + FF+ Y K R T+L +F +CLA + F + +
Sbjct: 142 FILTCERACATFFITDYEKKSRAYICTTLLLLTHTATFLLSCLATCEILNFTTGVAIS-G 200
Query: 199 YFAVGLTCIYAAFFVIILADLQFYWSLDGLQQKIDYYSNLVR 324
F VG IY F+I+ ++ LD Q+ YYS +R
Sbjct: 201 VFIVGAVVIY---FIILHINISIQKRLDDHDQQQKYYSLAIR 239
>Z93778-7|CAB07847.1| 800|Caenorhabditis elegans Hypothetical
protein F36F2.5 protein.
Length = 800
Score = 29.9 bits (64), Expect = 1.5
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Frame = +1
Query: 37 KNALNFFVDHYFKSLRRITMTSLNEQIEHPSFFWN--CLALQDDCPFYSSIDPKLYYFAV 210
KN F + F R MT L+ + F +N C+ L+ P Y + D +Y+F V
Sbjct: 203 KNCFGFSLKGTFHPYGRFYMTWLS--LVTLCFLFNAFCIPLRSSYP-YQTADNWMYWFIV 259
Query: 211 GLTC--IYAAFFVIILADLQFYWSLDGLQQKI 300
+C +Y ++I L+F + G+Q KI
Sbjct: 260 DYSCDLVYVIDMLLIKPRLRF--TRGGIQVKI 289
>Z81532-9|CAB04328.1| 800|Caenorhabditis elegans Hypothetical
protein F36F2.5 protein.
Length = 800
Score = 29.9 bits (64), Expect = 1.5
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Frame = +1
Query: 37 KNALNFFVDHYFKSLRRITMTSLNEQIEHPSFFWN--CLALQDDCPFYSSIDPKLYYFAV 210
KN F + F R MT L+ + F +N C+ L+ P Y + D +Y+F V
Sbjct: 203 KNCFGFSLKGTFHPYGRFYMTWLS--LVTLCFLFNAFCIPLRSSYP-YQTADNWMYWFIV 259
Query: 211 GLTC--IYAAFFVIILADLQFYWSLDGLQQKI 300
+C +Y ++I L+F + G+Q KI
Sbjct: 260 DYSCDLVYVIDMLLIKPRLRF--TRGGIQVKI 289
>U73476-1|AAB41492.1| 800|Caenorhabditis elegans cyclic
nucleotide-gated channel protein.
Length = 800
Score = 29.9 bits (64), Expect = 1.5
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Frame = +1
Query: 37 KNALNFFVDHYFKSLRRITMTSLNEQIEHPSFFWN--CLALQDDCPFYSSIDPKLYYFAV 210
KN F + F R MT L+ + F +N C+ L+ P Y + D +Y+F V
Sbjct: 203 KNCFGFSLKGTFHPYGRFYMTWLS--LVTLCFLFNAFCIPLRSSYP-YQTADNWMYWFIV 259
Query: 211 GLTC--IYAAFFVIILADLQFYWSLDGLQQKI 300
+C +Y ++I L+F + G+Q KI
Sbjct: 260 DYSCDLVYVIDMLLIKPRLRF--TRGGIQVKI 289
>AJ131742-1|CAA10498.1| 590|Caenorhabditis elegans protein (
Caenorhabditis elegansmRNA for dystrobrevin. ).
Length = 590
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 107 TNKSNTLHFSGIASPSKTIVHSIHR*IQ 190
+N+ +S SP+K +VHSIH+ +Q
Sbjct: 302 SNEHEMKEYSSYKSPTKQLVHSIHKSLQ 329
>AF098989-4|AAK18956.2| 590|Caenorhabditis elegans Dystrobrevin
homolog protein 1 protein.
Length = 590
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 107 TNKSNTLHFSGIASPSKTIVHSIHR*IQ 190
+N+ +S SP+K +VHSIH+ +Q
Sbjct: 302 SNEHEMKEYSSYKSPTKQLVHSIHKSLQ 329
>AF067942-6|AAG45579.1| 345|Caenorhabditis elegans Hypothetical
protein ZK6.4 protein.
Length = 345
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 471 MCRSLIHRQSSS*SGDNSRTLATSFQLLFSSFLCRY 364
MC + S S +N R L TS+Q L+SS L +Y
Sbjct: 250 MCVLIFCNPSLSQLSENGRRLLTSYQHLYSSALLQY 285
>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform a
protein.
Length = 2322
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 374 RKELKSN*KEVAKVRELSPD*EELC-RWMRLRHILCWPFVKMKLRNIQHIVAANM 535
+KE K+ + ++ + + + E LC +W L LCWP + RN +A +
Sbjct: 23 QKERKAILARIEEILQTTKNVESLCVKWTYLLDNLCWPSLTKHDRNDMKTLAGKV 77
>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform b
protein.
Length = 2019
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 374 RKELKSN*KEVAKVRELSPD*EELC-RWMRLRHILCWPFVKMKLRNIQHIVAANM 535
+KE K+ + ++ + + + E LC +W L LCWP + RN +A +
Sbjct: 23 QKERKAILARIEEILQTTKNVESLCVKWTYLLDNLCWPSLTKHDRNDMKTLAGKV 77
>U55364-14|AAA97979.1| 210|Caenorhabditis elegans Hypothetical
protein F21C10.1 protein.
Length = 210
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 410 WRLLFSCFSVLSCVDTNLC 354
WRLLF C LSC + C
Sbjct: 101 WRLLFECDESLSCCELECC 119
>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
nonsense-mediated mRNA decay proteinSMG-1 protein.
Length = 2322
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 374 RKELKSN*KEVAKVRELSPD*EELC-RWMRLRHILCWPFVKMKLRNIQHIVAANM 535
+KE K+ + ++ + + + E LC +W L LCWP + RN +A +
Sbjct: 23 QKERKAILARIEEILQTTKNVESLCVKWTYLLDNLCWPSLTKHDRNDMKTLAGKV 77
>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
protein.
Length = 2427
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -3
Query: 238 KMRRICKSVPQRSNKVLDLS--MNRMDNRLGGRGNSRKMK 125
K R+ +S P+ + ++ DL +N NRL + N+RK K
Sbjct: 1254 KANRLRQSHPEAAEQIYDLQRELNEQWNRLTSKANNRKEK 1293
>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
protein Y18D10A.13 protein.
Length = 2417
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 467 VGVSSIDKVPLNPVIIPVLWRLLFSCFSVLSCVDTNLCW 351
VG+++IDK P P+L L+ SC S + LCW
Sbjct: 1815 VGITTIDKANF-PTEEPLL-ELVHSCVSAVLQTQLRLCW 1851
>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
protein protein.
Length = 2417
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 467 VGVSSIDKVPLNPVIIPVLWRLLFSCFSVLSCVDTNLCW 351
VG+++IDK P P+L L+ SC S + LCW
Sbjct: 1815 VGITTIDKANF-PTEEPLL-ELVHSCVSAVLQTQLRLCW 1851
>AC006665-3|AAF39905.1| 605|Caenorhabditis elegans Hypothetical
protein H27M09.3 protein.
Length = 605
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 262 QFYWSLDGLQQKIDYYSNLVRKKVRRVQ-MNQQRLVSTQERTEKQLKRS 405
Q Y+ D L++ + + + RRVQ +N+QRLV T TE+ + +S
Sbjct: 111 QKYYECDDLRKSVQETNT----EARRVQEINEQRLVDTTRATEELIVKS 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,445,830
Number of Sequences: 27780
Number of extensions: 314937
Number of successful extensions: 904
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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