Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6m08
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.4  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = +1

Query: 88  ITMTSLNEQIEHPSFFWNCLALQDDCPFYSSID 186
           + +  L+E++      +NC +L    PF+++ D
Sbjct: 429 LILGELSEKLREDVINYNCRSLVASVPFFANAD 461


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = +1

Query: 88  ITMTSLNEQIEHPSFFWNCLALQDDCPFYSSID 186
           + +  L+E++      +NC +L    PF+++ D
Sbjct: 397 LILGELSEKLREDVINYNCRSLVASVPFFANAD 429


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 594 FPRKASSSYNNGLNVLKFNGMLAA 523
           FPR      NN L+  K+N  ++A
Sbjct: 367 FPRNIDEYNNNDLDTKKWNNKISA 390


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 199 YFAVGLTCIYAAFFVIILADLQFYW 273
           Y A  ++C    ++++ILA   FY+
Sbjct: 64  YAAAVMSCWMNVYYIVILAWAIFYF 88


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = +1

Query: 7    SIIPFLSNH 33
            S++PF+SNH
Sbjct: 1037 SVVPFVSNH 1045


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,956
Number of Sequences: 438
Number of extensions: 3476
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)