Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6m01
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    29   0.84 
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    27   2.6  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    27   2.6  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    25   7.9  

>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -2

Query: 346 IIYVTMYVKKIQPSEAQTHLMNVSSLTAFYNHNIPPYHDNSVI*VSSTQQATNQKSQ 176
           II++    KK+Q  E+  HL+N+  L + + + +P   DN V   S T  A   + Q
Sbjct: 332 IIFLVPSFKKLQNEESILHLLNI--LHSIFEYTVPEAIDNIV--QSKTSDARTSEIQ 384


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 334 TMYVKKIQPSEAQTHLMNVSSLTAFYNHNIPP 239
           T+YV+ + P EA+ +  N+  LT  + H   P
Sbjct: 264 TLYVQVMTPQEAEKYRYNIFDLTKVWPHKDVP 295


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 168 GRAWDFWFVACCVDDTYITLLSW-YGGIL*L*NAVREDTF 284
           G+A  FW     VD+ ++ +  W YGG L L     +D F
Sbjct: 624 GQAGKFWADLPFVDENHVGIWGWSYGGYLTLKTLETQDVF 663


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 269 ERRYVHQMSLGFTWLDLLYIHCNVDDAVYAIWVHQTIALRLV 394
           ++++ HQ   G+ W    + H   D  + A W+H T  ++LV
Sbjct: 66  KQKFEHQFRHGY-WKLHPHPHHQHDSIIPASWIHDTPHMKLV 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,439
Number of Sequences: 5004
Number of extensions: 56236
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)