Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6l20
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma...    32   0.094
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ...    27   2.0  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    27   2.7  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    26   4.7  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    26   4.7  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   6.2  

>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 434

 Score = 31.9 bits (69), Expect = 0.094
 Identities = 24/76 (31%), Positives = 33/76 (43%)
 Frame = +2

Query: 458 LVKNFGQYQEKLKVETFSKPTAEFSKVIASEMKPNEKCHKNIVITISGVSNPLAIHILSG 637
           LV N GQY       TF+      +K I           KN V  I+    P  IH+L+ 
Sbjct: 133 LVPNEGQYHAN--ASTFAPYVDSRTKAIGLSSVMFHSGQKNDVKDIANAFRPKGIHVLAD 190

Query: 638 LLEMSNLGLSKVYIYD 685
           L +   +GLSK+ + D
Sbjct: 191 LTQ--QVGLSKIDVQD 204


>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +2

Query: 482 QEKLKVETFSKPTAEFSKVIASE--MKPNEKCHKNIVITISGVSNPL 616
           +++LK ETF+    +  +VI     ++ +E C K IV TI+   +PL
Sbjct: 87  KQELKSETFNLDHVKILRVIEYSRFIQSSENCSKTIVDTIAKFVSPL 133


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +2

Query: 320 NSPIVWKEMLMKGSKPVYIGGAS--EFLEYCYSYYN 421
           N+PIV +EML +   P  +GG+S  EF++    +Y+
Sbjct: 130 NTPIVTQEMLAQHPPPSTVGGSSSQEFVKLEEKHYS 165


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 290 INQKNKWHHINSPIVWKEMLMKGSKPV 370
           +N++++WH + +PIV    L KG  PV
Sbjct: 566 LNKQSQWHDLENPIV----LKKGQAPV 588


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/78 (24%), Positives = 32/78 (41%)
 Frame = +2

Query: 440 SSKFCGLVKNFGQYQEKLKVETFSKPTAEFSKVIASEMKPNEKCHKNIVITISGVSNPLA 619
           S K    +K  G Y+EK+  E   +   E  K +    KP +   +  ++  S      A
Sbjct: 714 SDKEKQFIKEIGNYKEKVTGERGIEKRVETLKTLLQRTKPRDA--QTTLVASSSDMRLAA 771

Query: 620 IHILSGLLEMSNLGLSKV 673
           I  L  LL   +L + ++
Sbjct: 772 IEQLQKLLAQQSLSIKEL 789


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -1

Query: 287  YLTKPAILIPTFLFVHSKNLGDFGIYNQLQGIL 189
            Y ++  ++    LF +++NLG  GIY+ ++ ++
Sbjct: 1141 YSSREVVMAVDMLFSNTRNLGSEGIYDFVKALI 1173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,485
Number of Sequences: 5004
Number of extensions: 67526
Number of successful extensions: 190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)