Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6l20
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0661 + 5596739-5597047,5597125-5597703                           33   0.30 
07_01_0752 - 5783305-5783416,5783739-5783836,5784550-5784675,578...    29   3.7  
03_01_0363 + 2827990-2828055,2828215-2829306,2829715-2829837,282...    28   8.5  

>12_01_0661 + 5596739-5597047,5597125-5597703
          Length = 295

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +2

Query: 173 CETFAQVCLVADYISQNLPNFCYEQIKKSVLEWQAWL-SKINQKNKWHHI-NSPIVWKEM 346
           CE +A+     +  S +L +  Y Q+     +    L +K   KNKW  + N   +WK++
Sbjct: 16  CELYAEQVRAGNRPSTHLNSIGYSQVALKFQQRTHLLYTKRQLKNKWDKLRNEYTIWKKL 75

Query: 347 LMKGS 361
           L++GS
Sbjct: 76  LIRGS 80


>07_01_0752 -
           5783305-5783416,5783739-5783836,5784550-5784675,
           5784890-5785090,5785185-5785268,5785519-5785566,
           5785709-5785763,5786130-5786185,5786281-5786365,
           5786485-5786558,5787093-5787159,5788134-5788216
          Length = 362

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +2

Query: 386 SEFLEYCYSYYNFDAFMASSKFCGLVKNFGQYQEKLKVETFSKPTAEFSKVIASEMKPNE 565
           ++F++  +S   FDA  A    C      G Y+E  +V    +  A +   I    +PN 
Sbjct: 157 ADFMKMPFSDNTFDAVYAIEATCHAPDPVGCYKEIYRVLKPGQCFAVYEWCITDHYEPNN 216

Query: 566 KCHKNI 583
             HK I
Sbjct: 217 ATHKRI 222


>03_01_0363 +
           2827990-2828055,2828215-2829306,2829715-2829837,
           2829994-2830110,2830248-2830429,2830558-2830744,
           2830846-2831055,2831177-2831305,2832179-2832247,
           2832751-2832873,2832957-2833007,2833101-2833250
          Length = 832

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = +2

Query: 470 FGQYQEKLKVETFSKPTAEFSKVIASEMKPNEKCHKNIVITISGVSNPLAIHILSGLLEM 649
           F +YQ   K +  SK   + S      +K N+     + +TIS   N +A+ +L G ++ 
Sbjct: 375 FWEYQLMQKSDNDSK---QLSVTNVKTLKMNDDV---LAVTISPTGNHIAVALLDGAVKF 428

Query: 650 SNLGLSK 670
           SNL   K
Sbjct: 429 SNLEQDK 435


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,707,287
Number of Sequences: 37544
Number of extensions: 348766
Number of successful extensions: 788
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)