Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6l20
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   5.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   5.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   8.8  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 674 KLWIVPNCSFPKDPTIYGLPKDSKLQKL 591
           K W   N +F +DP  +G  +D  +  L
Sbjct: 107 KEWGTTNLTFEEDPEPFGRVRDHNISAL 134


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 569 CHKNIVITISGVSNPLAIHILSGLLEM 649
           CH   V TISG+  P+   + + L+ +
Sbjct: 144 CHPLRVYTISGLKRPIRFILAAWLIAL 170


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 607 ESFG-NPYIVGSFGNEQFGTIQSLHL 681
           E+FG +P ++  FG    G+  SLHL
Sbjct: 238 EAFGGDPELITIFGESAGGSSVSLHL 263


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 607 ESFG-NPYIVGSFGNEQFGTIQSLHL 681
           E+FG +P ++  FG    G+  SLHL
Sbjct: 238 EAFGGDPELITIFGESAGGSSVSLHL 263


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 583 SNNNFWSFESFGNPY 627
           S NN+W+ ++  NPY
Sbjct: 100 SCNNYWNTKNCVNPY 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,372
Number of Sequences: 438
Number of extensions: 4744
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)