Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6l19
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...   163   2e-41
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    44   2e-05
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    29   0.66 
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    27   2.7  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    26   4.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.1  

>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score =  163 bits (396), Expect = 2e-41
 Identities = 85/192 (44%), Positives = 111/192 (57%), Gaps = 5/192 (2%)
 Frame = +3

Query: 153 IRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLYVXXXXXXXXXXX 332
           + +A     K TLP LPY YNALEP +S  IM LHH KHH TY+NNL             
Sbjct: 16  VSIARGVHTKATLPPLPYAYNALEPALSETIMKLHHDKHHQTYVNNL--NAAQEKLADPN 73

Query: 333 XDTNTILNLLSAIKFNGGGHINHSIFWLNLTP-----CKTVPSCPFSQAVEKDFGSWDNL 497
            D    + L +AIKFNGGGHINHS+FW  L P      K V S    +A+   +GS ++ 
Sbjct: 74  LDLEGEVALQAAIKFNGGGHINHSLFWKILAPQKEGGGKPVTSGSLHKAITSKWGSLEDF 133

Query: 498 KNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLVPLFGIDVWEHAYYL 677
           + +++ A  ++QGSGW WL  +K    L+I T  NQD +  +    P+ GID WEHAYY 
Sbjct: 134 QKEMNAALASIQGSGWAWLIVDKD-GSLRITTTANQDTIVKSK---PIIGIDAWEHAYYP 189

Query: 678 QYKNVRADYVKA 713
           QY+N +A+Y KA
Sbjct: 190 QYENRKAEYFKA 201


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
 Frame = +3

Query: 465 VEKDFGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQD---------PLQ 617
           ++  FGS+  LK+Q+     +V G GW WL Y+ +     +    N           P  
Sbjct: 106 IDASFGSFGELKSQMVDVGNSVFGDGWLWLVYSPEKSLFSLLCTYNASNAFLWGTGFPKF 165

Query: 618 ATTGLVPLFGIDVWEHAYYLQY 683
            T  +VPL  +++W++AY   Y
Sbjct: 166 RTNAIVPLLCVNLWQYAYLDDY 187


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 707 HVVGTNVLVLKIVRVLPYIDSEERDQSSGGLQRIL 603
           H    +V ++K +  +P +D+EER +   GLQ I+
Sbjct: 409 HTYVRSVEIIKNIAEMPTVDAEERSRIFAGLQHII 443


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 22/98 (22%)
 Frame = +3

Query: 456 SQAVEKDFGSWDNLKNQLSTASVAVQGSGWGWL---GYNKQ--MKKLQIAT------CQN 602
           ++AV ++FGS +NL +++   +    G+ W W+    YN+   ++  Q  +       Q+
Sbjct: 141 NKAVNENFGSKENLLSKIHELASNSFGACWLWIVIDDYNRLNLLRTFQAGSPYLWTRWQS 200

Query: 603 QDPLQATT-----------GLVPLFGIDVWEHAYYLQY 683
            DP   ++             VP+  + +W HAYY  Y
Sbjct: 201 NDPHLISSVPDYSARPRKYAHVPILNLCLWNHAYYKDY 238


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 597  QNQDPLQATTGLVPLFGIDVW 659
            ++ DPL+AT+  +PLF +  W
Sbjct: 2142 KHTDPLRATSDFIPLFSMQRW 2162


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +1

Query: 616 RPPLDWSRSSESMYGSTR 669
           +PPL WS SS +++G+++
Sbjct: 101 KPPLTWSPSSANLFGTSK 118


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 284  DISRVMFAVMKTHDFTANDRLQCIVLVRK 198
            D   V+F+  KT    ANDRLQCI+  ++
Sbjct: 3138 DQQNVLFSKTKT----ANDRLQCIIQTKQ 3162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,862
Number of Sequences: 5004
Number of extensions: 58738
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)