Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6l19
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0512 + 14913356-14913769,14915907-14916032,14916129-149161... 109 2e-24
06_01_0314 + 2255908-2255979,2256354-2256512,2257021-2257209,225... 81 9e-16
06_01_0109 - 863806-864045,864448-864566,864680-864851,864914-86... 48 1e-05
12_02_0659 - 21612325-21612328,21613164-21613199,21613279-216133... 30 1.6
12_01_0485 - 3848721-3849227,3852019-3852369 29 4.8
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 28 8.5
>05_03_0512 +
14913356-14913769,14915907-14916032,14916129-14916185,
14916950-14917027,14917681-14917773
Length = 255
Score = 109 bits (262), Expect = 2e-24
Identities = 49/90 (54%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Frame = +3
Query: 441 PSCPFSQAVEKDFGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQA 620
P A+++DFGS++ L ++S A+QGSGW WL +K+ KKL + T NQDPL
Sbjct: 145 PHAKLGWAIDEDFGSFEALVKKMSAEGAALQGSGWVWLALDKEAKKLSVETTANQDPLVT 204
Query: 621 T-TGLVPLFGIDVWEHAYYLQYKNVRADYV 707
LVPL GIDVWEHAYYLQYKNVR DY+
Sbjct: 205 KGANLVPLLGIDVWEHAYYLQYKNVRPDYL 234
Score = 79.0 bits (186), Expect = 3e-15
Identities = 41/81 (50%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Frame = +3
Query: 153 IRVAGASRQKHT--LPELPYEYNALEPVISREIMSLHHSKHHATYINNLYVXXXXXXXXX 326
+ A A+R T LP+LPY+Y ALEP IS EIM LHH KHHATY+ N
Sbjct: 19 LAAAAAARGVTTVALPDLPYDYGALEPAISGEIMRLHHQKHHATYVANYNKALEQLDAAV 78
Query: 327 XXXDTNTILNLLSAIKFNGGG 389
D I++L SAIKFNGGG
Sbjct: 79 AKGDAPAIVHLQSAIKFNGGG 99
>06_01_0314 +
2255908-2255979,2256354-2256512,2257021-2257209,
2257390-2257561,2257711-2257784,2257818-2257904,
2257975-2257998,2258100-2258225
Length = 300
Score = 81.0 bits (191), Expect = 9e-16
Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 24/194 (12%)
Frame = +3
Query: 198 LPYEYNALEPVISREIMSLHHSKHHATYINNLYVXXXXXXXXXXXXDT---NTILNLLSA 368
L + +ALEP IS+ + LH KH Y+++L + N
Sbjct: 73 LVFTTDALEPYISKRTVELHWGKHQQDYVDSLNKQLATSMFYGYTLEELIKEAYNNGNPL 132
Query: 369 IKFNGGGHI-NHSIFWLNLTP-CKTVPSCPFSQAVEKDFGSWDNLKNQLSTASVAVQGSG 542
++N + NH FW ++ P P Q +EKDFGS+ N + + +++++ GSG
Sbjct: 133 PEYNNAAQVWNHHFFWESMQPEGGGSPGRGVLQQIEKDFGSFTNFREEFIRSALSLLGSG 192
Query: 543 WGWLGYNKQMKKLQIATCQNQ-------------------DPLQATTGLVPLFGIDVWEH 665
W WL ++ +K + QN D + L PL +D+WEH
Sbjct: 193 WVWLVLKRKERKFSVVHTQNAISPLALGDINNSIPSINLCDDIPCPLLLQPLINLDLWEH 252
Query: 666 AYYLQYKNVRADYV 707
AYYL YK+ R YV
Sbjct: 253 AYYLDYKDDRRMYV 266
>06_01_0109 -
863806-864045,864448-864566,864680-864851,864914-865108,
865179-865388,865738-865926
Length = 374
Score = 47.6 bits (108), Expect = 1e-05
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 7/128 (5%)
Frame = +3
Query: 198 LPYEYNALEPVISREIMSLHHSKHHATYINNLYVXXXXXXXXXXXXDTNTILNLLSAIK- 374
LPY +ALEP IS+E + H H ++ L + + +
Sbjct: 129 LPYPSDALEPYISKETVEQHWGVHQNIHVERLNGMIGGSEWEGMSLGQMMLSSFNEGREA 188
Query: 375 -----FNGGGHINHSIFWLNLTPCKT-VPSCPFSQAVEKDFGSWDNLKNQLSTASVAVQG 536
F+ NH +W ++ P P + + +DFGS+D + Q A+ G
Sbjct: 189 PHPPFFHAAQIWNHDFYWRSMQPGGGGKPPERLLKFINRDFGSYDGMIRQFMDAASTQFG 248
Query: 537 SGWGWLGY 560
SGW WL Y
Sbjct: 249 SGWVWLCY 256
>12_02_0659 -
21612325-21612328,21613164-21613199,21613279-21613394,
21613983-21614567
Length = 246
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 665 VLPYIDSEERDQSSGGLQRILVLACSYLQFLH 570
+ PY + EE D +SG ++ VL C +LQF H
Sbjct: 53 IFPYYEHEEIDSASGEKKK--VLPCYFLQFQH 82
>12_01_0485 - 3848721-3849227,3852019-3852369
Length = 285
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 551 AWLQQTNEEIANSYMPEPGSSAGHH-WIGPALR 646
AW E I + PG+ AG+H W+GP R
Sbjct: 134 AWKSWLEEHITATGKAPPGNVAGNHTWVGPPQR 166
>02_05_0936 -
32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 509 VDSFCGSTGLRLGLAWLQQTNEEIANSYM 595
VD GS GL+ + L QT EE+A +++
Sbjct: 2 VDKNDGSEGLKFNTSHLMQTTEEVARAFI 30
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,930,320
Number of Sequences: 37544
Number of extensions: 389504
Number of successful extensions: 1070
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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