Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6l06
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    93   3e-20
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    88   1e-18
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    31   0.18 
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        28   1.3  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    27   1.7  
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    27   2.2  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   6.7  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    25   8.9  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   8.9  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   8.9  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   8.9  

>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 93.1 bits (221), Expect = 3e-20
 Identities = 43/81 (53%), Positives = 55/81 (67%)
 Frame = +1

Query: 382 KLLNSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPN 561
           KLL + L E DP ++ I+  EK RQ+  + +IASENFTS  V+  L S + NKYSEG P 
Sbjct: 12  KLLKAPLAECDPTVYKILESEKSRQKESIALIASENFTSRAVMDALGSIMQNKYSEGYPG 71

Query: 562 QRYYGGNEYIDEIEILAQNRS 624
            RYYGGNE+ID+ E L Q R+
Sbjct: 72  ARYYGGNEFIDQAERLCQTRA 92


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 41/75 (54%), Positives = 53/75 (70%)
 Frame = +1

Query: 400 LWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPNQRYYGG 579
           L E DP + +I+  E DRQR+ + +IASENFTS  V+  L S + NKYSEG P  RYYGG
Sbjct: 12  LKEQDPTVAEIMRHEADRQRSSVVLIASENFTSRAVMDALGSVMSNKYSEGYPGARYYGG 71

Query: 580 NEYIDEIEILAQNRS 624
           N++ID+IE L Q R+
Sbjct: 72  NKFIDQIETLCQERA 86


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 16/62 (25%), Positives = 33/62 (53%)
 Frame = +1

Query: 436  VKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPNQRYYGGNEYIDEIEILAQ 615
            V+E+D     L+M+  EN +   + +  ++CLH+   + +   R Y G++ +D + +L  
Sbjct: 957  VEERDPPSPLLQML--ENNSKSVIGENWTTCLHSSLVDNLGKYRKYDGSKILDILRVLRN 1014

Query: 616  NR 621
             R
Sbjct: 1015 KR 1016


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -2

Query: 479 AIISSPAR*RSFSLTIISKSSGSASQRLLFSNLALIFVELMYLFAANVLEFL 324
           +I+ S +   S  LT + KSSG AS  + FSN +L +     +F   V++ L
Sbjct: 397 SILQSDSLMISTQLTSVQKSSGFASYSVQFSNCSLTWPVSEVVFQVAVVKSL 448


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +1

Query: 454 QRAGLEMIASENFTSVPVLQCLSSCLHNKY--SEGMPNQRYYGGNEYIDEIEIL 609
           Q+  L  I S   T    L CLS CL   Y    G+ +   + G E ++ +EIL
Sbjct: 192 QKLSLLSIQSNRITQFENLACLSHCLRELYVSHNGLTS---FSGIEVLENLEIL 242


>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 301 TTNN-IYGKRNSKT-FAAKRYISSTKMSAKLLNSNLWEADPELFDIIVK 441
           T NN +Y  R S T F  K Y+S  K   K + + L E++PE   +  K
Sbjct: 64  TVNNLVYSFRLSPTSFDKKSYMSYIKGYMKAIKARLQESNPERVPVFEK 112


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +1

Query: 373 MSAKLLNSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYS 546
           ++ + LN  L E D   + +   +KD +  G  ++ +EN     +L  LS+  +N +S
Sbjct: 84  ITCQALNITLSETDSSKYYLEGFKKDLEEEGSPLLFNENNVDSALLSRLSTTGNNTFS 141


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 316 KYCSLCVLPTITKIFLFLQSRNKNIVLLVCYTSCDI 209
           KY S C+LP +  +F         +++ V  T CDI
Sbjct: 246 KYFS-CILPQVWSLFSTQPRLASQLIIAVTNTHCDI 280


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 322 KRNSKTFAAKRYISSTKMSAKLLNSNLWEADPELFDI 432
           K+N+ T + K  I   ++S K LN NL   +  + D+
Sbjct: 768 KKNADTESFKNTIREAELSKKALNDNLGNKENIISDL 804


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 577 PHSTVDWACLQNICYED 527
           PHS + W C++++ ++D
Sbjct: 379 PHSKILWECIKSVSHQD 395


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 37  HSHSIIKQPNRTVKHVSLKCQRCVHKVHI 123
           H  S+I  PN   K+ SL C R + ++++
Sbjct: 199 HEISLIASPNSKKKYKSLYCWRKIFEIYM 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,103
Number of Sequences: 5004
Number of extensions: 53942
Number of successful extensions: 142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)