Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6l06
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1066 + 30098780-30098866,30099139-30099225,30099318-300994...   101   5e-22
11_04_0205 + 14860857-14861534,14862585-14862975,14863069-148631...    97   8e-21
01_06_1521 + 37956131-37957204,37958560-37958962,37959370-379594...    86   2e-17
05_04_0394 - 20906923-20907146,20907251-20907340,20908380-209087...    81   5e-16
12_02_0028 - 12437332-12437576,12438436-12438537,12438619-124390...    55   5e-08
02_01_0726 + 5440341-5440661,5441574-5441620,5442917-5442977,544...    29   3.0  
01_05_0565 + 23320576-23320767,23320934-23321009,23321109-233212...    28   5.2  

>03_05_1066 +
           30098780-30098866,30099139-30099225,30099318-30099439,
           30099580-30099656,30100135-30100259,30100497-30100589,
           30100840-30100932,30101016-30101213,30101337-30101441,
           30101535-30101600,30101808-30101885,30102144-30102233,
           30102325-30102448,30102590-30102741
          Length = 498

 Score =  101 bits (242), Expect = 5e-22
 Identities = 51/84 (60%), Positives = 58/84 (69%)
 Frame = +1

Query: 373 MSAKLLNSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEG 552
           M  K LN+ L E DPE+ DII  EK RQ  GLE+I SENFTSV V+Q + S + NKYSEG
Sbjct: 29  MWPKQLNAPLEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEG 88

Query: 553 MPNQRYYGGNEYIDEIEILAQNRS 624
            P  RYYGGNEYID  E L Q R+
Sbjct: 89  YPGARYYGGNEYIDMAESLCQKRA 112


>11_04_0205 +
           14860857-14861534,14862585-14862975,14863069-14863170,
           14863438-14863682
          Length = 471

 Score = 97.5 bits (232), Expect = 8e-21
 Identities = 44/72 (61%), Positives = 57/72 (79%)
 Frame = +1

Query: 409 ADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPNQRYYGGNEY 588
           ADP + D++ +EK RQR+G+E+IASENFTS  V++ L S L NKYSEGMP  RYYGGN+ 
Sbjct: 15  ADPLVHDLLEREKRRQRSGIELIASENFTSFAVMEALGSALTNKYSEGMPGARYYGGNDV 74

Query: 589 IDEIEILAQNRS 624
           IDEIE L ++R+
Sbjct: 75  IDEIENLCRDRA 86


>01_06_1521 +
           37956131-37957204,37958560-37958962,37959370-37959471,
           37959569-37959792
          Length = 600

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 42/78 (53%), Positives = 53/78 (67%)
 Frame = +1

Query: 391 NSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPNQRY 570
           N  L EADP++  ++  E+DRQ  G+E+IASENF    VL+ L S L NKYSEG P  RY
Sbjct: 141 NQALAEADPDVHALMELERDRQVRGIELIASENFVCRAVLEALGSHLTNKYSEGHPGARY 200

Query: 571 YGGNEYIDEIEILAQNRS 624
           YGGN++ID IE L   R+
Sbjct: 201 YGGNQHIDGIERLCHERA 218


>05_04_0394 -
           20906923-20907146,20907251-20907340,20908380-20908785,
           20909264-20910247
          Length = 567

 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 43/100 (43%), Positives = 62/100 (62%), Gaps = 6/100 (6%)
 Frame = +1

Query: 343 AAKRYISSTKMSAKLLNSNLW------EADPELFDIIVKEKDRQRAGLEMIASENFTSVP 504
           AAKR  ++  + A+      W      EADP++ +++ +E+ RQ  G+E+IASEN+    
Sbjct: 89  AAKRRAAAGGLEARRAAVRAWGCQPLTEADPDVHELMERERRRQAGGVELIASENYACRA 148

Query: 505 VLQCLSSCLHNKYSEGMPNQRYYGGNEYIDEIEILAQNRS 624
           VL  L S L NKYSEG+P  RYY GN++ID IE L  +R+
Sbjct: 149 VLDALGSHLTNKYSEGLPGARYYCGNQHIDAIERLCCDRA 188


>12_02_0028 -
           12437332-12437576,12438436-12438537,12438619-12439009,
           12439996-12440532
          Length = 424

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 24/39 (61%), Positives = 29/39 (74%)
 Frame = +1

Query: 508 LQCLSSCLHNKYSEGMPNQRYYGGNEYIDEIEILAQNRS 624
           ++ L S L NKYSEGMP  RYYGGNE IDE+E L + R+
Sbjct: 1   MEALGSPLTNKYSEGMPGSRYYGGNEVIDEVEELCRARA 39


>02_01_0726 +
           5440341-5440661,5441574-5441620,5442917-5442977,
           5442978-5443035,5443303-5443463,5443692-5443808,
           5443888-5443989,5444834-5444908,5444996-5445084,
           5445171-5445220,5445562-5445641,5445744-5445953,
           5446103-5446170,5446363-5446423,5446719-5447081
          Length = 620

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -2

Query: 404 QRLLFSNLALIFVELMYLFAANVLEFLFP*ILFVVCIADDNENLLIPPVTKQ 249
           Q  LFS L  +  ELM L   + L  +F   +  +CI +   +L++P +T++
Sbjct: 150 QEALFSALQRVKEELMLLGFISFLLSVFQKFINHICIPESAAHLMLPCITRE 201


>01_05_0565 +
           23320576-23320767,23320934-23321009,23321109-23321200,
           23321600-23321746
          Length = 168

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +1

Query: 40  SHSIIKQPNRTVKHVSLKCQRC---VHKVHIRLSASIKFTCLSENKTVLV 180
           S S +K+P      VS+ C  C   V K  +++   + F    ENK V V
Sbjct: 56  SSSAVKEPKTVALKVSMHCHCCARKVEKQILKMEGVVSFKVELENKKVTV 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,618,301
Number of Sequences: 37544
Number of extensions: 292723
Number of successful extensions: 576
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)