Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6l06
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-13|AAB53830.1|  484|Caenorhabditis elegans Maternal effec...   101   3e-22
U00048-12|AAL27228.1|  507|Caenorhabditis elegans Maternal effec...   101   3e-22
AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical ...    32   0.29 
AF068709-14|AAC19258.2|  312|Caenorhabditis elegans Serpentine r...    29   2.7  
Z81097-8|CAL44976.1|  185|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U23529-1|AAK39160.1|  269|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U00048-13|AAB53830.1|  484|Caenorhabditis elegans Maternal effect
           lethal protein32, isoform a protein.
          Length = 484

 Score =  101 bits (243), Expect = 3e-22
 Identities = 46/80 (57%), Positives = 60/80 (75%)
 Frame = +1

Query: 385 LLNSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPNQ 564
           +L  ++ + DPE+FDI+  EK RQR GLE+IASENFTS  V+  L S + NKYSEG P  
Sbjct: 24  ILVDHVEKVDPEVFDIMKNEKKRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGA 83

Query: 565 RYYGGNEYIDEIEILAQNRS 624
           RYYGGNE+ID++E+L Q R+
Sbjct: 84  RYYGGNEFIDQMELLCQKRA 103


>U00048-12|AAL27228.1|  507|Caenorhabditis elegans Maternal effect
           lethal protein32, isoform b protein.
          Length = 507

 Score =  101 bits (243), Expect = 3e-22
 Identities = 46/80 (57%), Positives = 60/80 (75%)
 Frame = +1

Query: 385 LLNSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPNQ 564
           +L  ++ + DPE+FDI+  EK RQR GLE+IASENFTS  V+  L S + NKYSEG P  
Sbjct: 47  ILVDHVEKVDPEVFDIMKNEKKRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGA 106

Query: 565 RYYGGNEYIDEIEILAQNRS 624
           RYYGGNE+ID++E+L Q R+
Sbjct: 107 RYYGGNEFIDQMELLCQKRA 126


>AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical
            protein Y46G5A.4 protein.
          Length = 2145

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
 Frame = +1

Query: 328  NSKTFAAKRYISSTKMSAKLLNSNLWEADP--ELFDIIVKEKDRQRAGLEMI-ASENFTS 498
            NSK  A K  + +  ++  ++ S  + +    ELF + +KEK + RA +E+I AS  F +
Sbjct: 1797 NSKCIAVKDEMDTVSLNLGMIASYYYISYQTIELFSMSLKEKTKTRALIEIISASSEFGN 1856

Query: 499  VPVLQCLSSCLHNKYSEGMPNQ 564
            VP ++     +  + +E +P Q
Sbjct: 1857 VP-MRHKEDVILRQLAERLPGQ 1877


>AF068709-14|AAC19258.2|  312|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 61 protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +1

Query: 211 YHKMCNKLTK--LCFCFVTGGIRRFSLSSAIHTTNN 312
           Y K+  KLTK  L +CF+  GI  +++ +A+H   N
Sbjct: 218 YEKITKKLTKIALTYCFLYAGILCWTVITALHNQYN 253


>Z81097-8|CAL44976.1|  185|Caenorhabditis elegans Hypothetical
           protein K07A1.17 protein.
          Length = 185

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -2

Query: 383 LALIFVELMYLFAANVLEFLFP*ILFVVCIADDNENLLI 267
           +  + ++++YLFA  +L F+F   LF   + +  E+LL+
Sbjct: 96  IRFLHLQMIYLFAHTILSFIF---LFANIVPNGKESLLV 131


>U23529-1|AAK39160.1|  269|Caenorhabditis elegans Hypothetical
           protein C15B12.2 protein.
          Length = 269

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 394 YLVTWRSFLWN*CIFSQRMS*NSFFHKYCSLC 299
           YLV W   LW  C++      NSF+H++  LC
Sbjct: 71  YLV-WTLLLWIPCLYHYTCRHNSFYHRH-KLC 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,446,294
Number of Sequences: 27780
Number of extensions: 300059
Number of successful extensions: 707
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)