Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6k20
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 35 0.011
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz... 31 0.10
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 31 0.10
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 30 0.31
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 30 0.31
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 29 0.42
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 29 0.73
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|... 28 0.96
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo... 28 1.3
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 28 1.3
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 27 2.2
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 3.9
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 26 5.1
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 26 5.1
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 6.8
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 6.8
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 25 6.8
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 25 9.0
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 25 9.0
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 9.0
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 9.0
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 9.0
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 34.7 bits (76), Expect = 0.011
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +1
Query: 361 EAFQSDDAQQYMVEDDVHAPQHVEEVHHISYNEDDEGDDGVFHIFDSE--KDEVSGQEDN 534
+AFQ D+ + E++ H P+ + S EGDD F + +S +DE+S ED+
Sbjct: 49 QAFQEDEGDEDWEEEE-HKPKAKRRYNTRSNESFSEGDDEPFEVSESSALEDELSDSEDS 107
Query: 535 QIDSTGS 555
I S S
Sbjct: 108 FIRSVRS 114
>SPBC18H10.15 |ppk23||serine/threonine protein kinase
Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 398
Score = 31.5 bits (68), Expect = 0.10
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 133 IEGEELERTWKSTRRLRVKKREEKIWDEFVKEQD 234
IE ++LE W+ RRL KKR+ KI +E K ++
Sbjct: 16 IENQKLEEEWRKKRRLE-KKRKRKILEEEEKAEE 48
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 31.5 bits (68), Expect = 0.10
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Frame = +1
Query: 85 GFSFMPEDNAANELKYIEG-EELERTWKSTRRLRVKKR-EEKIWDE--FVKEQDIVHSVC 252
G S+ P+ A +L +G EEL++ K L K+R ++K +++ V +QD+ HS+
Sbjct: 192 GMSYNPDAAAWMKLLDTKGSEELKKEQKRISELEEKERIQKKAFEDKGLVSDQDVNHSID 251
Query: 253 EDD 261
DD
Sbjct: 252 SDD 254
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 29.9 bits (64), Expect = 0.31
Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 3/130 (2%)
Frame = +1
Query: 157 TW-KSTRRLRVKKREEKIWDEFVKEQDIVHSVCEDDPYQFXXXXXXXXXXXXM--KSELQ 327
+W K LR K R++ + ++ +I+ D+ F + K EL
Sbjct: 227 SWRKLASELRKKSRQQYLKPRAQQQLEILRREIRDEEQLFAGEKLTQAEIRELEKKKELL 286
Query: 328 KMKNEQLLEELEAFQSDDAQQYMVEDDVHAPQHVEEVHHISYNEDDEGDDGVFHIFDSEK 507
++ E+ E +A + + Y E + EEV + Y + +EG+ + +E+
Sbjct: 287 RIAEERQRLEKQATEYQMPEDYFTEQGKLDRKRKEEVLYQRYKDSNEGEQNEVTMGAAEQ 346
Query: 508 DEVSGQEDNQ 537
Q+ N+
Sbjct: 347 QRWEAQQINK 356
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 29.9 bits (64), Expect = 0.31
Identities = 21/102 (20%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Frame = +1
Query: 310 MKSELQKMKNEQLLEELEAFQSDDAQQYMVEDDVHAPQHVEEVHHISYNEDDE--GDDGV 483
+K+ QK++NE+++EE++ + Q +D + E + +S + D E DD
Sbjct: 359 LKALQQKLENERIVEEIKKNGIQEDSQ-STDDSSKDDDNNSESNDMSPHNDAETRADDDA 417
Query: 484 F---HIFDSEKDEVSGQEDNQIDSTGSPCTVRENKDDAQSST 600
+ +F+ E++++ E++ +++ + + +K + ST
Sbjct: 418 YLMGDLFNQEEEDIQDTENDLLNANYTLLPLTTDKSGTRPST 459
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 29.5 bits (63), Expect = 0.42
Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 4/148 (2%)
Frame = +1
Query: 106 DNAANELK--YIEGEELERTWKSTRRLRVKKREEKIWDEFVKEQDIVHSVCEDDPYQFXX 279
D+ ++EL Y++ T K + + + K E K+ D + I E+D +
Sbjct: 64 DSKSSELNDDYLDAHRKSSTKKKSSQNKQAK-ESKLLDPIAFQHKIA---LEEDDREIAH 119
Query: 280 XXXXXXXXXXMKSELQKMKNE--QLLEELEAFQSDDAQQYMVEDDVHAPQHVEEVHHISY 453
KS K+ E LLE+L+ + DD ED + EV
Sbjct: 120 LEKMLGIKSKDKSAHSKIDKEFGWLLEDLDQ-EIDDIGVPGTEDPSYGHSEDSEV----- 173
Query: 454 NEDDEGDDGVFHIFDSEKDEVSGQEDNQ 537
DD GD G +SE++ SG+E+ +
Sbjct: 174 -SDDTGDHGSVDELESEREGNSGEEEEE 200
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 28.7 bits (61), Expect = 0.73
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +1
Query: 448 SYNEDDEGDDGVFHIFDSEKDEVSGQEDNQIDSTGSPCTVRENKDDAQSSTDS 606
S N D DD DSE + S ED+ S+ S + +D S+TD+
Sbjct: 273 SSNSSDSEDDSSSDSSDSESE--SSSEDSDSTSSSSDSDSSSSSEDGNSNTDT 323
>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 464
Score = 28.3 bits (60), Expect = 0.96
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 310 MKSELQKMKNEQLLEELEAFQSDDAQQYMVEDDVHAPQHVEEVHHISYNEDDEGDDGV-F 486
+KS L ++++EQ+ + S+ A + + D+H +H++ D DD +
Sbjct: 154 LKSALHELRDEQVQLQCRQAPSNQALKSLYAKDMHLFRHLDPADFPYSTPDIFADDWLNA 213
Query: 487 HIFDSEKDE 513
++ D E D+
Sbjct: 214 YVIDCESDD 222
>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 610
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +1
Query: 328 KMKNEQLLEELEAFQSDDAQQYMVEDDVHAPQHVEEVHHISYNEDDEGDDGVFH-IFDSE 504
K+K+ ++EL S D ++ ++ + + + V H+ E + + I ++
Sbjct: 64 KVKHASQIKEL-GLSSKDTKRTLLGNSLDVQKDASGVKHLQEQSSKEIKNPISQPILPNK 122
Query: 505 KDEVSGQEDNQIDSTGSPCTVRENKDDAQSSTD 603
KDE+S + + IDS+ T +A + D
Sbjct: 123 KDEISPAKPSAIDSSIKDVTKSHPATNANFTAD 155
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/100 (21%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Frame = +1
Query: 328 KMKNEQLL-EELEAFQSDDAQQYMV--EDDVHAPQHVEEVHHI-SYNEDDEGDDGVFHIF 495
K KN + +EL+ + +D + + +D++ + + H+ Y E+++ D + H
Sbjct: 307 KFKNNPTIPQELDLVEEEDQITHYISLDDNLDVQESLGIFHYDPDYEENEKKYDAIKHEI 366
Query: 496 DSEKDEVSGQEDNQIDSTGSPCTVRENKDDAQSSTDSPEL 615
E+D+ +ED + DS E+++D + + P++
Sbjct: 367 LGEEDDDENEEDEE-DSE----ETSESEEDESVNDEKPQV 401
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 622 ITEVPESPSTTARRLYS-RGLCTDCPWNQFDCLLDLKL 512
+ E+ + S+ RLY RGLCT C + DC + L
Sbjct: 601 LLEIIQMASSNYLRLYLLRGLCTLCLIGELDCFTAIDL 638
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 3.9
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -2
Query: 221 TNSSHIFSSLFFTRNLLVDFQVLSNSSPSMYFNSLAALSSGMNEKPLT 78
+NSS I + T + F S+ SP+ F+ +ALSS NE+ T
Sbjct: 512 SNSSIIVPTTVSTSGSVSSFS--SSPSPTSSFSGTSALSSSSNEETTT 557
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 25.8 bits (54), Expect = 5.1
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +1
Query: 337 NEQLLEELEAFQSDDAQQYMVEDDVHAPQHV-EEVHHISYNEDDEGDDGVFHIFDSEKDE 513
N++ E+E + ++ VEDD+ A V E+ H + N G I + +K
Sbjct: 228 NDEQTREIEMYADEELDNIFVEDDIIAHLAVAEDTAHPAANNHHSEKAGT-QINNKDKGS 286
Query: 514 VSGQEDNQIDSTGSPCTVRENKDDA 588
+ + Q T P V +N D+
Sbjct: 287 HNSAKPVQRSHT-YPVAVPQNTSDS 310
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 328 KMKNEQLLEELEAFQSDDAQQYMVEDDVHAPQHVEEVHHISYNEDDEGDD 477
+M + L E++ + + +DDV H E H+ S N++D+G+D
Sbjct: 673 EMLDANNLPEMQFALEQELESNSSDDDV-VEVHRELSHNSSSNDEDDGND 721
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 6.8
Identities = 21/87 (24%), Positives = 35/87 (40%)
Frame = +1
Query: 319 ELQKMKNEQLLEELEAFQSDDAQQYMVEDDVHAPQHVEEVHHISYNEDDEGDDGVFHIFD 498
E +K+ EE + F SD+ + ED + EEV S ++ G+
Sbjct: 190 EATTLKDASSEEENKEFVSDEGHSIVTEDASADSESEEEVDGHSEGKELAGES---EEEG 246
Query: 499 SEKDEVSGQEDNQIDSTGSPCTVRENK 579
S D+V D+ D +R+N+
Sbjct: 247 SNVDDVEDSGDSSSDKNSINHEIRDNE 273
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 421 QHVEEVHHISYNEDDEGDDGVFHIFDSEKDEVSGQEDNQID 543
+++ IS NE+D+ DD V +S+K E G + ID
Sbjct: 97 KNLNNTKEISLNEEDDSDDSV----NSDKLENEGSVGSSID 133
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.4 bits (53), Expect = 6.8
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +1
Query: 454 NEDDEGDDG--VFHIFDSEKDEVSGQEDNQIDSTGSPCTVRENKDDAQSSTDSPE 612
NE D DD V + + D++ D+ + E KDD SSTD E
Sbjct: 1057 NESDNDDDELPVQQVVSGSLANDAFNVDDEFDNQFANLQAAEIKDDDNSSTDEEE 1111
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 25.0 bits (52), Expect = 9.0
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 433 EVHHISYNEDDEGDDGVFHIFDSEKDEVSGQEDN-QIDSTGSPCTVRENKDD 585
+V ++SYN D+G+ F E + V ++ N ++DS S V+E++DD
Sbjct: 430 KVEYVSYNSVDKGNSSPFK--PLELNVVGEKKANAEVDSLPSE-NVQESEDD 478
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 25.0 bits (52), Expect = 9.0
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +1
Query: 412 HAPQHVEEVHHISYNEDDEGDD 477
H +H + HH Y+ DD+ D
Sbjct: 54 HHKEHKKSHHHWEYSSDDDSSD 75
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 9.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 409 VHAPQHVEEVHHISYNED 462
+H QH++ VH + NED
Sbjct: 170 IHTAQHMQIVHKLELNED 187
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +1
Query: 496 DSEKDEVSG-QEDNQIDSTGSPCTV-RENKDDAQSS 597
DSE+DE ED++ S+ ++ EN+DD QSS
Sbjct: 97 DSEEDENDAVSEDHENFSSSEASSISEENEDDDQSS 132
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 9.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 409 VHAPQHVEEVHHISYNED 462
+H QH++ VH + NED
Sbjct: 170 IHTAQHMQIVHKLELNED 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,024
Number of Sequences: 5004
Number of extensions: 40207
Number of successful extensions: 186
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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