Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6k19
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    28   0.99 
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    27   1.7  
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.3  
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    25   7.0  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   7.0  
SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   9.2  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   9.2  

>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 21/56 (37%), Positives = 28/56 (50%)
 Frame = +2

Query: 368 LVLYTAPLKMLISAPATVNVLHLRATHRFLRALIFYCQYYLQTSDEMSKRSLELEA 535
           L L    LK L++A     ++ LR     L  L+F  QY L+T   MSKR L  +A
Sbjct: 667 LYLSVLELKNLVNANRENILMQLRKAA--LHQLLFRSQYNLETLSLMSKRILREDA 720


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = +2

Query: 335 TDVVTVQDIKDLVLYTAPLKMLI-----SAPATVNVLHLRATHRFLRALIFY 475
           T V+ V+ +KD  L TA  +  I     SA   +N+ HL  TH+ L +L F+
Sbjct: 527 TRVIMVKKLKDKDL-TAENRRYIQLCVESATRVINIAHLLLTHKCLSSLSFF 577


>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 422 NVLHLRATHRFLRALIFYCQYYLQ--TSDEMSKRSLEL 529
           NVL +R T   L A+ ++C + LQ  ++   SK  L++
Sbjct: 5   NVLTIRCTFHVLFAICYFCDHLLQYISNSRDSKAGLKI 42


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 131 NFESLFEDGHWEWDE 175
           N+ S F+   WEWDE
Sbjct: 152 NWRSYFDTSAWEWDE 166


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +2

Query: 503 EMSKRSLELEAKIRTHRSDEIERIFQINL 589
           E+SK+  E E KIR+  +D+IE+  +IN+
Sbjct: 737 ELSKKLFE-ERKIRSGSNDDIEKNKEINV 764


>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 100

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 4   FELIVMF*YSLFKCFFYLYFLISTT 78
           F LIV   ++LF  FF+L F   TT
Sbjct: 69  FLLIVFLFFNLFPTFFFLPFFPDTT 93


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 152 DGHWEWDENVMQLVFTSDRPRRESSYESTLQTTFGPVEFKDNLDLLDELRFRK-LFQRKT 328
           D ++  DEN   L   S   +     E  +  T  PV+   N D +D LR +    ++ T
Sbjct: 284 DDYFFTDENKQTLSLCSFLSQVMYYLEVAIDITIPPVKIIVNFDKVDSLRVQSPRSEKAT 343

Query: 329 VETD 340
           +E D
Sbjct: 344 IELD 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,777
Number of Sequences: 5004
Number of extensions: 38973
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)