Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6k17
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    28   1.2  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    28   1.5  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   2.0  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    26   4.7  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    26   6.2  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   8.2  

>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
 Frame = +2

Query: 287 LDNTISKHAHPID----VPRKPITRRQSSVDPQ 373
           L +    H  P+D    VP +P+T++ +SVDPQ
Sbjct: 411 LKSITDTHYFPVDELEQVPEQPVTQQPASVDPQ 443


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/45 (22%), Positives = 26/45 (57%)
 Frame = -3

Query: 628 IDTKNNHNKSRNDYACLNYEAILSLLFTIKTFLMFCKRSSFILTL 494
           ++  NN  +++++   ++++A+      +   L+FC+   F+LTL
Sbjct: 291 VEYNNNFIRAKSEEEYIDFKALAKRYLAVPFVLLFCEPIVFLLTL 335


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 550 FTIKTFLMFCKRSSFILT 497
           F+ KTF++FC  SSFI+T
Sbjct: 251 FSQKTFIIFCFLSSFIIT 268


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 427 TVFHFRIATLILTKTIFYLG 368
           TVFH  +   +LT T+F LG
Sbjct: 164 TVFHISLTVSLLTMTVFLLG 183


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +2

Query: 110 QGSNGGANIKPVARPSIHYHKGYCPFACG 196
           + S   +++   ++P +H  +GYCP   G
Sbjct: 288 ESSPSRSSVLSTSKPEVHETEGYCPHKTG 316


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 551 QETKNSFIVQTSIVISAFVMIIFSVNYSNVLNNKNEILPSSIKYDKNSF 697
           Q+ K SF+V  ++V +      F     + +NN NE+L +    +KN +
Sbjct: 301 QQKKGSFLVLGNVVATKGSYNTFQGEAESAINNLNELLGTYGYSNKNVY 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,461
Number of Sequences: 5004
Number of extensions: 55938
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)