Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6k17
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0428 - 15820169-15820236,15820296-15820367,15820450-158205...    32   0.53 
04_03_0418 - 15686775-15686842,15686902-15686973,15687056-156871...    32   0.53 
12_02_1169 - 26655170-26655332,26655429-26655504,26655603-266557...    28   6.5  

>04_03_0428 -
           15820169-15820236,15820296-15820367,15820450-15820519,
           15824222-15824312,15825023-15825093,15825176-15825341,
           15826169-15826393,15829075-15829307,15829464-15829618,
           15829636-15829855
          Length = 456

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -2

Query: 518 KIQFHFDSHQNNFCF**CSMNY*KHYSNVVHCFPFQNCYSHSYKNDFLFGDQLNS 354
           KI FHF+   N+        +Y   Y    +CF FQ+   H YK+  + GD + S
Sbjct: 364 KITFHFE---NDLTLDVYPYDYLLEYEGNQYCFGFQDAGIHGYKDMIILGDMVIS 415


>04_03_0418 -
           15686775-15686842,15686902-15686973,15687056-15687125,
           15690828-15690918,15691629-15691699,15691782-15691947,
           15692775-15692999,15695681-15695913,15696070-15696224,
           15696242-15696461
          Length = 456

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -2

Query: 518 KIQFHFDSHQNNFCF**CSMNY*KHYSNVVHCFPFQNCYSHSYKNDFLFGDQLNS 354
           KI FHF+   N+        +Y   Y    +CF FQ+   H YK+  + GD + S
Sbjct: 364 KITFHFE---NDLTLDVYPYDYLLEYEGNQYCFGFQDAGIHGYKDMIILGDMVIS 415


>12_02_1169 -
           26655170-26655332,26655429-26655504,26655603-26655715,
           26655808-26655913,26656001-26656235,26656415-26656573,
           26657279-26657377,26657472-26657568,26657650-26657768,
           26657860-26658000,26658100-26658184,26658287-26658488,
           26659274-26659379
          Length = 566

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +2

Query: 197 EFTMDGNRVSRSISPIGENLANTEGYGQDELDNTISKHAHP 319
           E+T+ G+ V+R ISP   NLA   G GQD L   +++H  P
Sbjct: 115 EYTIGGSAVARGISP---NLALFFG-GQDSLPWFLARHELP 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,303,051
Number of Sequences: 37544
Number of extensions: 309316
Number of successful extensions: 630
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)