Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6k17
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.2  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   5.1  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   5.1  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   5.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   8.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 159 ILGRATGLILAPPLLPCSILLIKFRKKYLLFSLYL 55
           +L     L+L   +LP + L++    KYLLF+  +
Sbjct: 272 LLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIM 306


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 132 LAPPLLPCSILLIKFRKKYLLFSLYLFG 49
           LA   L  +IL++ F   YLL   ++FG
Sbjct: 78  LAVADLAVAILVMPFNVAYLLLGKWIFG 105


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 132 LAPPLLPCSILLIKFRKKYLLFSLYLFG 49
           LA   L  +IL++ F   YLL   ++FG
Sbjct: 78  LAVADLAVAILVMPFNVAYLLLGKWIFG 105


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 132 LAPPLLPCSILLIKFRKKYLLFSLYLFG 49
           LA   L  +IL++ F   YLL   ++FG
Sbjct: 78  LAVADLAVAILVMPFNVAYLLLGKWIFG 105


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -2

Query: 197 PHKQMGNSLCDNEYLVELQV*YWPPHY 117
           PH Q    L  + Y   +Q+ + P H+
Sbjct: 440 PHHQHSTPLAHSSYPAAIQIGHTPHHH 466


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 616 NNHNKSRNDYACLNYEAILSLLFTI 542
           NN+N + N+Y   NY     L + I
Sbjct: 332 NNYNNNYNNYNNNNYNNYKKLYYNI 356


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 402 VAILKWKTVNYI*VMFLIVHRTLLEAEVILMRVKMKLDLL 521
           V IL WK +  +    L V    +  EVI  R K + ++L
Sbjct: 381 VQILGWKELPNVGDEILEVENDKILQEVIKFRQKQRAEIL 420


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 242 IGENLANTEGYGQD 283
           +GENL N + +G D
Sbjct: 355 VGENLHNHQSFGMD 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,745
Number of Sequences: 438
Number of extensions: 4467
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)