Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6k13
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF068719-7|AAO21425.1|  399|Caenorhabditis elegans Uncoordinated...    27   8.6  
AF068719-6|AAV58864.1|  457|Caenorhabditis elegans Uncoordinated...    27   8.6  
AF068719-5|AAC17781.1|  458|Caenorhabditis elegans Uncoordinated...    27   8.6  

>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
            protein Y73F8A.5 protein.
          Length = 1019

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 465  RVVVKIGRRTVPQKTRKELRGHRDASSA 548
            RV+   GRR+ P  +R  LR HR+  +A
Sbjct: 983  RVIFSKGRRSAPNNSRTTLRDHRENDNA 1010


>AF068719-7|AAO21425.1|  399|Caenorhabditis elegans Uncoordinated
           protein 23, isoform b protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 496 YRRKQGRSSAATETR-VRRSSA*LQRAPQFQRQQPGRCRASRST 624
           YRR    +S  + T  +RR+S   Q  PQ+ +QQP + +  ++T
Sbjct: 75  YRRSPTPTSTQSPTSTLRRNSQQNQAPPQYSQQQPQQAQQRQTT 118


>AF068719-6|AAV58864.1|  457|Caenorhabditis elegans Uncoordinated
           protein 23, isoform c protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 496 YRRKQGRSSAATETR-VRRSSA*LQRAPQFQRQQPGRCRASRST 624
           YRR    +S  + T  +RR+S   Q  PQ+ +QQP + +  ++T
Sbjct: 133 YRRSPTPTSTQSPTSTLRRNSQQNQAPPQYSQQQPQQAQQRQTT 176


>AF068719-5|AAC17781.1|  458|Caenorhabditis elegans Uncoordinated
           protein 23, isoform a protein.
          Length = 458

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 496 YRRKQGRSSAATETR-VRRSSA*LQRAPQFQRQQPGRCRASRST 624
           YRR    +S  + T  +RR+S   Q  PQ+ +QQP + +  ++T
Sbjct: 134 YRRSPTPTSTQSPTSTLRRNSQQNQAPPQYSQQQPQQAQQRQTT 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,239,326
Number of Sequences: 27780
Number of extensions: 212628
Number of successful extensions: 485
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)