Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6k11
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23510-3|AAC46782.1|  340|Caenorhabditis elegans Hypothetical pr...    33   0.20 
U80451-1|AAB37835.1|  591|Caenorhabditis elegans Dnaj domain (pr...    27   9.9  

>U23510-3|AAC46782.1|  340|Caenorhabditis elegans Hypothetical
           protein R12C12.3 protein.
          Length = 340

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -2

Query: 213 VFWILFIFCNAF*MFLDVH*I*FTSSIFYIGVSWQVVLRYTLYSFLFVINNFFF 52
           V  I F FC+ F MFL V    F   +      W+V   +T++  +F  ++ FF
Sbjct: 235 VVTIFFAFCHLFSMFLKVAESIFGGFLTQTSFYWEVFAEFTIFLIIFHTSSTFF 288


>U80451-1|AAB37835.1|  591|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 9 protein.
          Length = 591

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -2

Query: 552 NHLSDILFLTLKPIMSQLAEILTIQKNLEENFTRKMGELETQIQSAGLRNAILLD 388
           NH   +  LTL PI S +  +  I+K   ++ T    E+  Q+ + G+  AI +D
Sbjct: 322 NHAKAVGSLTLSPINSNVRLVYYIRKPENDSIT----EMSVQLTTYGVNPAISMD 372


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,636,098
Number of Sequences: 27780
Number of extensions: 321918
Number of successful extensions: 874
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)