Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6k08
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 39 8e-04
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 38 0.001
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 33 0.030
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 33 0.030
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 33 0.039
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 32 0.090
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 31 0.16
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 31 0.21
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 30 0.28
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 30 0.28
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 30 0.36
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 30 0.36
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual 29 0.48
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ... 29 0.64
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 29 0.84
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 28 1.1
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 1.5
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 28 1.5
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 27 1.9
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 1.9
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 2.6
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 2.6
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 27 3.4
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 26 4.5
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 26 4.5
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 26 4.5
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 26 5.9
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 26 5.9
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|... 26 5.9
SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.9
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 25 7.8
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 38.7 bits (86), Expect = 8e-04
Identities = 35/160 (21%), Positives = 74/160 (46%), Gaps = 3/160 (1%)
Frame = +1
Query: 217 IWDVARPTPQVLMEQARRDLMEAE-EKLAIKREEEKNNRAVMNGKWEELRSKETLLKESF 393
I D+ Q+ +E R +EAE E+ + E+ + + + ++EELR++
Sbjct: 148 ITDLLEEQQQLKLEIER---LEAETERANSETEQYEKQKEALEEEYEELRNECLKHDPQL 204
Query: 394 ISFNKFIRENQEKRDRAERKMTADAEVLERKTRETDAMRLRVAEMTEVKELMEKQVKDYT 573
+ + +++ E+ +R K +DA++ ++ + D+M +E ++ +EK KD
Sbjct: 205 DAEIRTLQDTFEEVERTLTKQVSDAKIADKPLK--DSMFNSNSEKEKIMHALEKAEKDAD 262
Query: 574 IYEDYLMAVVHQYPEF--KQPLDVLNRYEALAAAKSTLAD 687
IY +++ + Q K + N LA + LA+
Sbjct: 263 IYSEFIQQYMEQLESSLEKSSTAIENAQNRLAEMTAHLAE 302
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 37.9 bits (84), Expect = 0.001
Identities = 27/93 (29%), Positives = 44/93 (47%)
Frame = +1
Query: 256 EQARRDLMEAEEKLAIKREEEKNNRAVMNGKWEELRSKETLLKESFISFNKFIRENQEKR 435
E A L E EE+ R + +N + + E+L K LL+E + +K +RE EK
Sbjct: 51 EAAESQLEELEEETKQLRLKA-DNEDIQKTEAEQLSRKVELLEEELETNDKLLRETTEKM 109
Query: 436 DRAERKMTADAEVLERKTRETDAMRLRVAEMTE 534
+ + K ++ RE D M ++ EMT+
Sbjct: 110 RQTDVKAEHFERRVQSLERERDDMEQKLEEMTD 142
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 33.5 bits (73), Expect = 0.030
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +1
Query: 349 WEELRSKE--TLLKESFISFNKFIRENQE-KRDRAERKMTADAEVLERKTRETDAMRLRV 519
W + R+ E L+++S + E Q +++R R E+LE+K E + RL+
Sbjct: 79 WAKKRNVEEQNLIEQSITESQRIFSEKQRLEQERFNR------ELLEKKRIEAERQRLKD 132
Query: 520 AEMTEVKELMEKQVKD 567
E KELMEK+ K+
Sbjct: 133 EEERRKKELMEKEKKE 148
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 33.5 bits (73), Expect = 0.030
Identities = 21/92 (22%), Positives = 45/92 (48%)
Frame = +1
Query: 232 RPTPQVLMEQARRDLMEAEEKLAIKREEEKNNRAVMNGKWEELRSKETLLKESFISFNKF 411
RP E+ D +EA E +++ EK+N +V+N +E+ E L + F+S +
Sbjct: 104 RPAKAENDEKVPSDAIEALETQLTQQKSEKHNSSVINFIYEK---NERLWSDPFVSSQRL 160
Query: 412 IRENQEKRDRAERKMTADAEVLERKTRETDAM 507
++ +E++ +++ D + R + D +
Sbjct: 161 RKQFRERKKIEKKQEAKDLSLKNRAALDIDIL 192
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 33.1 bits (72), Expect = 0.039
Identities = 23/103 (22%), Positives = 43/103 (41%)
Frame = +1
Query: 259 QARRDLMEAEEKLAIKREEEKNNRAVMNGKWEELRSKETLLKESFISFNKFIRENQEKRD 438
+ RDL+E L RA+ K E LR + L SF++ ++N+ +
Sbjct: 849 EVERDLVETNNSLTAVENLLTTERAIALDKEEILRRTQERLANIEDSFSETKQQNENLQR 908
Query: 439 RAERKMTADAEVLERKTRETDAMRLRVAEMTEVKELMEKQVKD 567
+ + E+ +T + ++E E+KE + + KD
Sbjct: 909 ESASLKQINNELESELLEKTSKVETLLSEQNELKEKLSLEEKD 951
Score = 26.6 bits (56), Expect = 3.4
Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Frame = +1
Query: 253 MEQARRDLMEAEEKLAIKREEEKNNRAVMNGKWEELRSKETLLKESFISFNKFIRENQE- 429
+E+ +LM +L E+EK + + EELRS ++ L+ S K E Q+
Sbjct: 1253 LERKITNLMHEYSQLGKTFEDEKRKALIASRDNEELRSLKSELE----SKRKLEVEYQKV 1308
Query: 430 -KRDRAERKMTADAEVLERKTRETDAMRLRVAEM 528
+ + R + ++ +L K + +++R +++E+
Sbjct: 1309 LEEVKTTRSLRSEVTLLRNKVADHESIRSKLSEV 1342
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 31.9 bits (69), Expect = 0.090
Identities = 36/172 (20%), Positives = 76/172 (44%), Gaps = 5/172 (2%)
Frame = +1
Query: 187 ESSSMVKKYPIWDVARPTPQVLMEQARRDLMEAEEKLAIK----REEEKNNRAVMNGKWE 354
E +S V+K LME + L EA+EK+ + +E + A N
Sbjct: 1475 ELASAVEKLGALQKLHSESLSLMENIKSQLQEAKEKIQVDESTIQELDHEITASKNNYEG 1534
Query: 355 ELRSKETLLKESFISFNKFIRENQEKRDRAERKMT-ADAEVLERKTRETDAMRLRVAEMT 531
+L K++++++ + + E++ +R T ++E+L+ +R D L +
Sbjct: 1535 KLNDKDSIIRDLSENIEQLNNLLAEEKSAVKRLSTEKESEILQFNSRLAD---LEYHKSQ 1591
Query: 532 EVKELMEKQVKDYTIYEDYLMAVVHQYPEFKQPLDVLNRYEALAAAKSTLAD 687
EL ++K + E+ +A + + LD+ N+ + L+ K +L++
Sbjct: 1592 VESELGRSKLKLASTTEELQLAENERLSLTTRMLDLQNQVKDLSNIKDSLSE 1643
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 31.1 bits (67), Expect = 0.16
Identities = 14/75 (18%), Positives = 36/75 (48%)
Frame = +1
Query: 304 KREEEKNNRAVMNGKWEELRSKETLLKESFISFNKFIRENQEKRDRAERKMTADAEVLER 483
KRE +++ + ++L K L ++ + I++N+E+ + + + D + +
Sbjct: 140 KRESLLETYTLLDAQRKDLEEKVLLSQDRKLESEAIIKQNEERNEEMFQSLIEDKRLCSQ 199
Query: 484 KTRETDAMRLRVAEM 528
E D +R+ +E+
Sbjct: 200 VRTEYDRIRMEASEL 214
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 30.7 bits (66), Expect = 0.21
Identities = 28/112 (25%), Positives = 48/112 (42%)
Frame = +1
Query: 175 KSLMESSSMVKKYPIWDVARPTPQVLMEQARRDLMEAEEKLAIKREEEKNNRAVMNGKWE 354
K+ E+ + K + R ++ ++ + EAEE+ A EEE NR + +
Sbjct: 757 KAYQEAYAKAKNVIDAERERQRKEIFEQKLAEAIREAEEEAARAAEEEA-NRELHEQEEA 815
Query: 355 ELRSKETLLKESFISFNKFIRENQEKRDRAERKMTADAEVLERKTRETDAMR 510
+ R+ E + + + + RE EK +R R E + RK E A R
Sbjct: 816 QKRAIEERTRAAREAKEREQREMAEKLERQRRIQQERDEEISRKLAEKAAAR 867
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 30.3 bits (65), Expect = 0.28
Identities = 29/104 (27%), Positives = 51/104 (49%)
Frame = +1
Query: 205 KKYPIWDVARPTPQVLMEQARRDLMEAEEKLAIKREEEKNNRAVMNGKWEELRSKETLLK 384
KK DV + ++ R + M+ E++ I+ E +K +R ++ + ++L+ E LLK
Sbjct: 112 KKRGPTDVFGALKHLEAKKRRIESMDEEKRRKIE-ESDKWHRVLLQAEGKKLKDNEQLLK 170
Query: 385 ESFISFNKFIRENQEKRDRAERKMTADAEVLERKTRETDAMRLR 516
+S +R E+K ++DA ERK E AM +R
Sbjct: 171 KSI------------RRKEKEKKKSSDA-WKERKDNEKKAMLMR 201
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 30.3 bits (65), Expect = 0.28
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Frame = +1
Query: 274 LMEAEEKLAIKREEEKNNRAVMNGKWEELRSKE-TLLKESFISFNKFIRENQEKRDRAER 450
L EE+L + EEEKN+ AV + K E R E + N + ++ R A
Sbjct: 193 LQYIEERLR-ELEEEKNDLAVYHKKDNERRCLEYAIYSREHDEINSVLDALEQDRIAALE 251
Query: 451 KMTADAEVLERKTRETDAMRLRVAEMTEVKELM--EKQVKDYTIYEDY 588
+ D+ ++ + ++ + E+ EL+ EKQ D EDY
Sbjct: 252 RNDDDSGAFIQREERIERIKAEITELNHSLELLRVEKQQND----EDY 295
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.9 bits (64), Expect = 0.36
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Frame = +1
Query: 226 VARPTPQVLMEQARRD-LMEAEEKLAIKREEEKNNRAVMNGKWEEL---RSKETLLKESF 393
+A Q +E R++ + E+ +KRE+EK + + K EE + +E LK+
Sbjct: 620 LAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQ 679
Query: 394 -------ISFNKFIRENQEKRDRAERKM--TADAEVLERKTRE 495
++ + +RE +EKR ERK D E ER+ RE
Sbjct: 680 QEADREKMAREQRLREEEEKRILEERKRREKLDKEEEERRRRE 722
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +1
Query: 256 EQARRDLMEAEEKLAIKRE----EEKNNRAVMNGKWEELRSKETLLKES 390
++A R+ M E++L + E EE+ R ++ + EE R +E L KES
Sbjct: 680 QEADREKMAREQRLREEEEKRILEERKRREKLDKEEEERRRRELLEKES 728
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +1
Query: 406 KFIRENQEKRDRAERKMTADAEVLERKTRETDAMRLRVAEMTEVKELMEKQVKD 567
K IRE ++KRD+ ++ A E ER+ RE + R+AE K L K+ ++
Sbjct: 589 KKIREKEKKRDKKKQLKLAKEE--ERQRREAE----RLAEQAAQKALEAKRQEE 636
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 29.9 bits (64), Expect = 0.36
Identities = 22/105 (20%), Positives = 53/105 (50%)
Frame = +1
Query: 256 EQARRDLMEAEEKLAIKREEEKNNRAVMNGKWEELRSKETLLKESFISFNKFIRENQEKR 435
++A+ + + +E +KRE+E+ R + ++LR +E + + K +E +
Sbjct: 83 QRAQEERIRQKEAERLKREKERQQRE----QEKKLREQEKIAAKKMKELEKLEKERIRLQ 138
Query: 436 DRAERKMTADAEVLERKTRETDAMRLRVAEMTEVKELMEKQVKDY 570
++ RK D ++ E++ +A RLR ++ KE + ++ ++
Sbjct: 139 EQQRRKEERDQKLREKE----EAQRLRQEQILN-KERQQLKLNNF 178
>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
Length = 231
Score = 29.5 bits (63), Expect = 0.48
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +1
Query: 379 LKESFISFNKFIRENQEKRDRAER 450
++E F+SF F++E+Q+KR++ R
Sbjct: 1 MEEEFLSFKNFLQEDQDKREKIIR 24
>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 29.1 bits (62), Expect = 0.64
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Frame = +1
Query: 250 LMEQARRDLMEAEEKLA-IKREEE----KNNRA-----VMNGKWEE-LRSKETLLKESFI 396
L + R MEAEE+LA I+ EEE + RA + KW++ LR K+ ++ +
Sbjct: 46 LERRLERKRMEAEEELAKIETEEEGGDFERRRAWDWTIEESEKWDQRLRKKKQTIQN--V 103
Query: 397 SFNKFIRENQEKRDRAERKMTADAEVLERKTRETDAMRLRVAEMTEVKEL 546
+F+ + + + +R R + D E ++ +E + VA E + L
Sbjct: 104 AFSDYHSQASKDYNRGIRDLKPDYEKYDKDKKEEKSKSRSVALYDEAERL 153
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 28.7 bits (61), Expect = 0.84
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -3
Query: 150 GWTVRYSNRRQIFCC-FLHFCY 88
GW +R+S R+ I CC F F Y
Sbjct: 198 GWLIRFSFRKSIICCLFTPFSY 219
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 28.3 bits (60), Expect = 1.1
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Frame = +1
Query: 190 SSSMVKKYPIWDVARPTPQVLMEQARRDLMEAE--EKLAIKREEEKNNRAVMNGKWEELR 363
S ++ KK+ I P + EQARR +E E E + R + N A K +E++
Sbjct: 469 SENIFKKFDIDYATIPYRDQVREQARRRRLEVEKTEPKKLARPAKIKNEAW--SKQKEVK 526
Query: 364 SKETLLKESFISFNKFIR-ENQEKRDRAERKMTADAEVLERKTRETDAMRLRVAEMTEVK 540
K +E S +F++ + E + ++++ + A E T D + ++E++
Sbjct: 527 EKRNTRREKRKSKKEFLKAQKNEASNNLKQEIVSKAGAQE--TENDDLIDEESDALSELE 584
Query: 541 E 543
E
Sbjct: 585 E 585
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/99 (19%), Positives = 42/99 (42%)
Frame = +1
Query: 370 ETLLKESFISFNKFIRENQEKRDRAERKMTADAEVLERKTRETDAMRLRVAEMTEVKELM 549
E + K+S + EN+ + A+ + LE++ + L ++ + +E
Sbjct: 1003 ENITKDSETRVALLLEENKHLNNELSSHRNAEKQHLEKENDYKQQLLLVTEDLRKTREDY 1062
Query: 550 EKQVKDYTIYEDYLMAVVHQYPEFKQPLDVLNRYEALAA 666
EK++ + L + Y + + ++ LN+ AL A
Sbjct: 1063 EKELLRHADARSTLQKLREDYTKALEQVEDLNKEIALKA 1101
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +1
Query: 439 RAERKMTADAEVLERKTRETDAMRLRVAEMTEVKELMEKQVKDYTIYEDY 588
R E ++ A ++ + + RE + + + + E ++ +EKQ +Y + EDY
Sbjct: 260 RDEEQLFAGEKLTQAEIRELEKKK-ELLRIAEERQRLEKQATEYQMPEDY 308
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 27.5 bits (58), Expect = 1.9
Identities = 19/107 (17%), Positives = 52/107 (48%)
Frame = +1
Query: 253 MEQARRDLMEAEEKLAIKREEEKNNRAVMNGKWEELRSKETLLKESFISFNKFIRENQEK 432
++ +R L E++L E N++ V + EEL + + L ++ + +RE +
Sbjct: 516 VQYLQRRLRMVEDEL----HEAINSKNVQQSRSEELEQQISKLTDNLQEYRNTVRELKLD 571
Query: 433 RDRAERKMTADAEVLERKTRETDAMRLRVAEMTEVKELMEKQVKDYT 573
+++++K +++ K E ++ + + + +E K V++++
Sbjct: 572 LEKSKKKNEDLSKLEVEKVEEIANLKKELTHLAKQQEFGFKYVQEFS 618
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 27.5 bits (58), Expect = 1.9
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Frame = +1
Query: 97 MKKTTKDLAPIAIPHGPPVECT-AEYFKSLMESSSMVKKYPIWDVARPTPQVL-----ME 258
MKK T +G P E T A++ KS ++ S P +VA+P P V +E
Sbjct: 362 MKKKTLKKEGKLDKYGRPNENTPADWSKSYIDYSD-----PNAEVAKPAPVVAPAAPTVE 416
Query: 259 QARRDLMEAEEKLAIKREEEKNNRAVMNGKWEELRSKETLLKESFISFNKFIRENQEKRD 438
+ +++++ +++ E+ + A K EE R K+ KE +E +EK++
Sbjct: 417 AEVNGVEDSKKRKSVESSEKDEDEAA---KKEEKRRKKEAKKEK--------KEKKEKKE 465
Query: 439 RAERKMTAD 465
+ E+K ++
Sbjct: 466 KKEKKKKSE 474
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Frame = +1
Query: 259 QARRDLMEAEEKLAI------KREEEKNNRAVMNGKWEELRSKETLLKESFISFNKFIRE 420
Q R++ EA ++LA+ +R+E++N NG +EE+ ++ F IRE
Sbjct: 218 QNLREVREARQRLAMVMEHLRERQEQRNLELQRNGSFEEIER----ARQRFALLGDNIRE 273
Query: 421 NQEKRD 438
QE+ +
Sbjct: 274 PQEEEN 279
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 358 LRSKETLLKESFISFNKFIRENQEKRDRAERKMTADAEVLERKTRETD 501
++ +T K++ +S K IRE EK ER++ + E + R D
Sbjct: 411 VKESKTYTKKTSVSLQKAIREYVEKEAYYERRLLSIMESIRPHIRNID 458
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 3.4
Identities = 26/133 (19%), Positives = 56/133 (42%), Gaps = 7/133 (5%)
Frame = +1
Query: 253 MEQARRDLMEAEEKLAIKREEEKNNRAVMNGKWEELRSKETLLKE--SFISFN----KFI 414
M RR L E + +E ++ V+ G + E + E + +S++ +
Sbjct: 56 MAMNRRLLSRISEMETVLEKESPSDPYVLLGSFLEAKKSEDMDSAIPGGMSYHHMLMSLL 115
Query: 415 RENQEKRDRAERKMTADAEVLERKTRETDAMRLRVAEMTEVK-ELMEKQVKDYTIYEDYL 591
+ ++ D E K D++ R+ + L++ E + + + +E + K+Y ED
Sbjct: 116 KVIKDAEDTTEEKSMDDSDKCLRRLKSHKERLLKLLEDAQKEYDTLEAESKNYITSEDLH 175
Query: 592 MAVVHQYPEFKQP 630
+ Y + K+P
Sbjct: 176 LGFDSTYVQKKEP 188
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/70 (20%), Positives = 33/70 (47%)
Frame = +1
Query: 286 EEKLAIKREEEKNNRAVMNGKWEELRSKETLLKESFISFNKFIRENQEKRDRAERKMTAD 465
+EKL ++++E+ + ++ + L S E K+ +S + +RD A
Sbjct: 576 DEKLRLEKKEQLSYLEILKVIEQMLESNEQKFKKQIVSLASENAKLAAQRDAAVENANYS 635
Query: 466 AEVLERKTRE 495
++++KT +
Sbjct: 636 RSLIQKKTTD 645
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/61 (21%), Positives = 28/61 (45%)
Frame = +1
Query: 163 AEYFKSLMESSSMVKKYPIWDVARPTPQVLMEQARRDLMEAEEKLAIKREEEKNNRAVMN 342
A+Y++ + + ++ P A P PQ +M D + +++ A + K N+ +
Sbjct: 363 AQYYRQMQQYMEAMRNMPAAAGAVPYPQPVMPAGMADWQQQQQQGAAYFDPSKMNQGTGD 422
Query: 343 G 345
G
Sbjct: 423 G 423
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 178 SLMESSSMVKKYPIWDVARPTPQVLM 255
S+ E +++VK+Y W A PQ L+
Sbjct: 271 SISELTNVVKRYDTWQAAGGIPQTLL 296
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 5.9
Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Frame = +1
Query: 232 RPTPQVLMEQARRDLMEAEEKL--AIKREEEKNNRAVMNGKWEELRSKETLLKE-SFISF 402
RP P AR EA+E + K +E+K+++ N K E++ K + S F
Sbjct: 138 RPEPSKRKRTARPKKPEAKEPSPKSRKTDEDKHDKD-SNEKIEDVNEKTIKFADKSQEEF 196
Query: 403 NK----------FIRENQEKRDRAERKM--TADAEVLERKTRETDAMRL--RVAEMTEVK 540
N+ I + E + ++++ + D ++ E + T + V ++ + +
Sbjct: 197 NENGPPSGQPNGHIESDNESKSPSQKESNESEDIQIAETPSNVTPKKKPSPEVPKLPDNR 256
Query: 541 ELMEKQVKDYTIYEDYLMAV 600
EL KQV++Y +ED + ++
Sbjct: 257 ELTVKQVENYDSWEDLVSSI 276
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/65 (21%), Positives = 28/65 (43%)
Frame = +1
Query: 277 MEAEEKLAIKREEEKNNRAVMNGKWEELRSKETLLKESFISFNKFIRENQEKRDRAERKM 456
ME + R + NNR W++ + T + S N + E+ E +D +++
Sbjct: 1 MEKRNETGNNRLKRSNNRGKSKKDWKDASVETTPRETSVDEDNTSVFEDVEAQDSRQKRF 60
Query: 457 TADAE 471
++ E
Sbjct: 61 SSTLE 65
>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 25.8 bits (54), Expect = 5.9
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +1
Query: 256 EQARRDLMEAEE-KLAIKREEEKNNRAVMNGKWEELRSKETLLKESFISFNKFIRENQEK 432
E+ ++ L A+ ++ K EK + GK E + + K+ KF +EN
Sbjct: 7 EKLKKKLDSAKSGRVEKKHSNEKKYLKSVKGKNNENENSYIVDKKRMNELKKFAKENDIP 66
Query: 433 RDRAERKMTADAEVLERKT 489
+ DA L RKT
Sbjct: 67 ESQVLDAYGVDASKLTRKT 85
>SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 166
Score = 25.8 bits (54), Expect = 5.9
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = +1
Query: 373 TLLKESFISFNKFIRENQEKRDRAERKMTADAEVLERKTRETDAMRLRVAEMTEVKELME 552
TL E + F + E +E + E++ + L +K + + M E +
Sbjct: 60 TLTDEQILWFRE--SEKRELMWKKEKEQLLKEKELRQKALDKERMVSSKPETNPKTPISL 117
Query: 553 KQVKDYTIYEDYLMAVVHQYPEFKQPLD-VLNRYEAL 660
K++KD IY++ ++ E ++ LD + ++ AL
Sbjct: 118 KELKDIEIYQNQFHYSAYEILEEEKILDNIFRKFTAL 154
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 601 VHQYPEFKQPLDVLNRYEALAAAKST 678
+H Y E +Q +D+ EAL A+ST
Sbjct: 771 MHAYEELEQKIDLQRLIEALDVAEST 796
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,901
Number of Sequences: 5004
Number of extensions: 52863
Number of successful extensions: 211
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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