Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6k08
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.91 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    25   0.91 
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    25   0.91 
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    22   4.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.5  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 133 IPHGPPVECTAEYFKSLMESSSMVKKYPIW 222
           +P G    C  +YF   + S+S +  Y IW
Sbjct: 194 VPEGNMTACGTDYFNRGLLSASYLVCYGIW 223


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
 Frame = +1

Query: 289 EKLAIKRE---EEKNNRAVMNGKWEELRSKETLLKESFISFNKFIRENQEK-RDRAERKM 456
           EKL  ++E   EE+ NR   N +  E R + +   E    + K+   ++E+ RDRAER+ 
Sbjct: 19  EKLHNEKEKLLEERTNRK-RNSRSRE-REQNSYKNER--EYRKYRETSKERSRDRAERER 74

Query: 457 TADAEVLERKTRET 498
           + + +++   +  T
Sbjct: 75  SREPKIISSLSNNT 88


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 133 IPHGPPVECTAEYFKSLMESSSMVKKYPIW 222
           +P G    C  +YF   + S+S +  Y IW
Sbjct: 70  VPEGNMTACGTDYFNRGLLSASYLVCYGIW 99


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/51 (21%), Positives = 22/51 (43%)
 Frame = +1

Query: 340 NGKWEELRSKETLLKESFISFNKFIRENQEKRDRAERKMTADAEVLERKTR 492
           NG  EE R +     E      +   EN+   +R  ++++ D  + E + +
Sbjct: 15  NGSPEEKRPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQIK 65


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 66  FSYKLVQNNRNEENNK 113
           FSY +V NNRN  + K
Sbjct: 483 FSYTIVINNRNNTSMK 498


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 525 NDGSQGVDGETSQRLYDLR 581
           +DGS G DG+ S    D+R
Sbjct: 197 DDGSDGNDGDESSCRADIR 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,727
Number of Sequences: 438
Number of extensions: 3772
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)