Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6k07
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   2.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.9  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   6.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.8  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   9.0  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   9.0  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   9.0  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   9.0  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   9.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.0  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 110 LYLIHPYWILFLSIVMIY 163
           ++L+  YW L L I ++Y
Sbjct: 6   IWLVSLYWYLILQIALVY 23


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 448 RFFMKALALTANTLYWSNYI 507
           RFF     L  N +YWS ++
Sbjct: 364 RFFFPFSFLILNVVYWSTFL 383


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = +2

Query: 149 IVMIYTMYTQFIVIN*HVFFLNQMFKITMALH 244
           + ++   +  FIV    ++F+N++  I M++H
Sbjct: 388 LTVVCLAFWSFIVSTILLWFINKIIPIRMSIH 419


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 422 NSYTENGQNHVNIYKKLH 369
           N+Y     N+ N YKKL+
Sbjct: 336 NNYNNYNNNNYNNYKKLY 353


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = +1

Query: 190 KLTCFFFKSNVQNNNGFA*LQFVNTSHAD 276
           K+      + + NNN +  LQ+ N ++ +
Sbjct: 302 KIISSLLNNTIHNNNNYKKLQYYNINYIE 330


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = +1

Query: 190 KLTCFFFKSNVQNNNGFA*LQFVNTSHAD 276
           K+      + + NNN +  LQ+ N ++ +
Sbjct: 313 KIISSLLNNTIHNNNNYKKLQYYNINYIE 341


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = +1

Query: 190 KLTCFFFKSNVQNNNGFA*LQFVNTSHAD 276
           K+      + + NNN +  LQ+ N ++ +
Sbjct: 313 KIISSLLNNTIHNNNNYKKLQYYNINYIE 341


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = +1

Query: 190 KLTCFFFKSNVQNNNGFA*LQFVNTSHAD 276
           K+      + + NNN +  LQ+ N ++ +
Sbjct: 302 KIISSLLNNTIHNNNNYKKLQYYNINYIE 330


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 422 NSYTENGQNHVNIYKKLH 369
           N+Y     N+ N YKKL+
Sbjct: 335 NNYNNYNNNYNNNYKKLY 352


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +1

Query: 685 KWNTWPVKWKP 717
           +WN + +KW P
Sbjct: 89  RWNDYKLKWNP 99


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 65  EIVYILLIVSLICYLL 112
           E+ Y+LL   L+CYL+
Sbjct: 693 ELSYVLLSGILLCYLV 708


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,554
Number of Sequences: 438
Number of extensions: 5271
Number of successful extensions: 19
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)